Factsheet for Bra012256.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01347	Canola	nucleus	85.76	97.43
AT1G20900.1	Thale cress	nucleus	90.94	90.35
Bra025854.1-P	Field mustard	nucleus	81.55	88.11
Bra016444.1-P	Field mustard	nucleus	89.32	87.62
Bra015738.1-P	Field mustard	nucleus	68.28	73.26
Bra008262.1-P	Field mustard	nucleus	66.99	72.13
Bra003717.1-P	Field mustard	nucleus	65.37	70.38
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	48.87	61.63
KRH51551	Soybean	plastid	40.45	61.27
PGSC0003DMT400025705	Potato	plastid	49.84	59.23
GSMUA_Achr9P12320_001	Banana	plastid	47.25	51.96
Zm00001d051620_P001	Maize	plastid	51.46	50.16
TraesCS6A01G277700.1	Wheat	plastid	52.75	49.85
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	52.43	49.39
Zm00001d017825_P001	Maize	plastid	51.78	49.38
HORVU6Hr1G070090.1	Barley	plastid	52.75	49.24
TraesCS6D01G258400.1	Wheat	plastid	52.43	49.24
TraesCS6B01G306100.1	Wheat	plastid	52.43	49.24
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	52.75	48.51
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	48.54	47.47
Zm00001d045928_P001	Maize	nucleus	46.6	47.06
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	45.95	47.02
KXG19929	Sorghum	nucleus	47.57	46.23
TraesCS7A01G225700.1	Wheat	nucleus	47.9	45.82
HORVU7Hr1G046930.1	Barley	cytosol, nucleus, peroxisome	46.28	45.25
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	46.6	44.72
TraesCS7D01G228800.1	Wheat	nucleus	45.63	44.34
Os06t0326900-01	Rice	nucleus	45.95	44.1
Bra004732.1-P	Field mustard	plastid	36.89	43.68
Bra000281.1-P	Field mustard	plastid	36.25	42.91
Bra004911.1-P	Field mustard	nucleus	41.75	41.88
Bra040183.1-P	Field mustard	cytosol	39.48	41.64
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	38.51	41.61
Bra016853.1-P	Field mustard	plastid	34.95	41.38
Bra012639.1-P	Field mustard	cytosol	38.51	40.89
Bra005355.1-P	Field mustard	cytosol	37.54	40.85
Bra003217.1-P	Field mustard	nucleus	38.84	40.27
Bra039338.1-P	Field mustard	nucleus	40.13	40.26
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	35.28	40.22
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	40.78	40.13
Bra007176.1-P	Field mustard	plastid	38.19	39.73
EER88668	Sorghum	cytosol	33.98	38.89
TraesCS7B01G297300.1	Wheat	cytosol	35.28	37.33
Bra019355.1-P	Field mustard	nucleus	39.48	37.31
Bra013649.1-P	Field mustard	nucleus	38.84	36.81
TraesCS7A01G395400.1	Wheat	cytosol	34.3	36.68
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	34.95	36.61
Bra014735.1-P	Field mustard	plastid	36.25	36.48
Bra026211.1-P	Field mustard	plastid	23.3	35.12
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	37.86	34.51
HORVU7Hr1G093230.2	Barley	cytosol	33.01	33.66
Bra000593.1-P	Field mustard	cytosol	28.16	33.08

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra012256	EnsemblPlants:Bra012256.1	EnsemblPlants:Bra012256.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
UniProt:M4D6Z6	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF43	SUPFAM:SSF117856	UniParc:UPI0002541581	SEG:seg	:	:

Description

AT1G20900 (E=3e-073) ESC, ORE7, AHL27 | ESC (ESCAROLA); double-stranded DNA binding

Coordinates

chrA07:-:9048236..9049165

Molecular Weight (calculated)

31804.9 Da

IEP (calculated)

7.100

GRAVY (calculated)

-0.580

Length

309 amino acids

Sequence
(BLAST)

001: MEGGYEQGGG ANSRHFHNLF RPEIHHQQFQ PQGGINLTDQ HRHQQQHEQH QQPSDDSRES DHSNKDHHQP GGPDSSDRAT SSSAPGKRPR GRPPGSKNKA
101: KPPIIVTRDS PNALKSHVLE VSPGADIVES VSTYARRRGR GVSVLGGNGT VSNVTLRQPV TSGNGVGVGA GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGVVVAP LVASAPVILM ATSFSNAVFE RLPIEEEEEE GGDGGAGGAP QMQQAPSASP PSGVTGQGQL GGNVGGYGFS ADPHLHGWGA
301: GTPSRPPFN

Best Arabidopsis Sequence Match ( AT1G20900.1 )
(BLAST)

001: MEGGYEQGGG ASRYFHNLFR PEIHHQQLQP QGGINLIDQH HHQHQQHQQQ QQPSDDSRES DHSNKDHHQQ GRPDSDPNTS SSAPGKRPRG RPPGSKNKAK
101: PPIIVTRDSP NALRSHVLEV SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG
301: WGAGTPSRPP F

Arabidopsis Description

AHL27AT-hook motif nuclear-localized protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.