Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14465.1 | CDX92171 | AT3G17860.1 | 21798944 |
| AT4G14465.1 | CDX95810 | AT3G17860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23160 | Canola | cytosol, nucleus, vacuole | 98.23 | 99.28 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 91.13 | 91.46 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.07 | 67.66 |
| GSMUA_Achr11P... | Banana | cytosol | 40.78 | 66.86 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 60.99 | 66.15 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 53.9 | 64.68 |
| Solyc09g089620.1.1 | Tomato | nucleus | 63.48 | 62.59 |
| KRH31728 | Soybean | cytosol | 59.57 | 62.22 |
| TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 54.96 | 62.0 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 59.22 | 61.85 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 63.48 | 61.72 |
| KRG90376 | Soybean | nucleus | 58.51 | 61.57 |
| PGSC0003DMT400044451 | Potato | nucleus | 62.06 | 61.4 |
| Zm00001d018508_P001 | Maize | cytosol | 52.48 | 60.41 |
| Os08t0563200-01 | Rice | cytosol | 50.0 | 60.0 |
| Zm00001d049906_P001 | Maize | nucleus | 55.32 | 58.87 |
| Zm00001d031887_P001 | Maize | nucleus | 55.67 | 58.36 |
| Os02t0820800-00 | Rice | cytosol, nucleus, peroxisome | 54.96 | 58.27 |
| KXG25365 | Sorghum | nucleus | 55.67 | 58.15 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 62.06 | 57.76 |
| HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 56.74 | 56.94 |
| TraesCS4A01G312400.1 | Wheat | nucleus | 57.45 | 56.84 |
| HORVU4Hr1G000870.2 | Barley | nucleus | 57.8 | 56.79 |
| TraesCS6A01G053800.1 | Wheat | nucleus | 56.38 | 56.38 |
| TraesCS6B01G072300.1 | Wheat | nucleus | 56.03 | 56.03 |
| TraesCS6D01G055500.1 | Wheat | cytosol | 56.03 | 56.03 |
| TraesCS4D01G001800.1 | Wheat | nucleus | 56.38 | 55.79 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 57.8 | 55.63 |
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 57.09 | 55.52 |
| TraesCS6D01G383400.1 | Wheat | cytosol, extracellular, peroxisome | 57.09 | 55.52 |
| HORVU6Hr1G091740.1 | Barley | cytosol | 57.09 | 55.14 |
| CDY64701 | Canola | nucleus | 59.93 | 54.34 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 59.93 | 53.82 |
| OQU85972 | Sorghum | cytosol | 56.38 | 53.54 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 54.61 | 53.47 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 53.9 | 52.6 |
| Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 35.11 | 52.38 |
| CDY02949 | Canola | plastid | 50.71 | 46.58 |
| CDY53687 | Canola | nucleus | 48.58 | 45.97 |
| CDY60321 | Canola | plastid | 48.23 | 45.95 |
| CDX76085 | Canola | plastid | 50.0 | 45.93 |
| CDY68242 | Canola | plastid | 47.52 | 45.12 |
| CDY41211 | Canola | plastid | 47.16 | 45.08 |
| CDX90445 | Canola | plastid | 42.91 | 44.16 |
| CDY20404 | Canola | nucleus | 41.13 | 42.8 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 40.78 | 42.12 |
| CDY18931 | Canola | nucleus | 46.1 | 42.07 |
| CDX74739 | Canola | nucleus | 46.1 | 41.94 |
| CDX78802 | Canola | cytosol | 43.26 | 41.92 |
| CDY41289 | Canola | nucleus | 46.81 | 41.9 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 46.81 | 41.9 |
| CDY37040 | Canola | nucleus | 45.74 | 41.88 |
| CDX87591 | Canola | nucleus | 41.49 | 41.79 |
| CDY45983 | Canola | nucleus | 42.55 | 41.67 |
| CDX98771 | Canola | nucleus | 46.81 | 41.64 |
| CDY53650 | Canola | plastid | 38.3 | 41.54 |
| CDX79838 | Canola | plastid | 38.3 | 41.54 |
| CDY72485 | Canola | nucleus | 40.07 | 41.39 |
| CDY27387 | Canola | nucleus | 45.74 | 41.35 |
| CDY04391 | Canola | nucleus | 47.87 | 41.28 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 41.84 | 41.26 |
| CDY54780 | Canola | cytosol | 42.2 | 40.75 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 39.72 | 40.58 |
| CDX94128 | Canola | nucleus | 46.81 | 40.37 |
| CDY70947 | Canola | plastid | 36.88 | 39.85 |
| CDY21451 | Canola | cytosol | 34.4 | 39.59 |
| CDX84222 | Canola | cytosol | 26.95 | 39.58 |
| CDX96613 | Canola | nucleus | 42.2 | 39.53 |
| CDY45266 | Canola | plastid | 28.72 | 39.51 |
| CDX83182 | Canola | cytosol | 34.04 | 39.18 |
| CDY14862 | Canola | plastid | 36.17 | 39.08 |
| CDX68095 | Canola | cytosol | 36.52 | 38.15 |
| CDY33658 | Canola | nucleus | 39.36 | 38.01 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 29.08 | 37.96 |
| CDY31511 | Canola | nucleus | 35.82 | 37.55 |
| CDX85952 | Canola | cytosol | 35.82 | 37.13 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 39.72 | 37.09 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 39.36 | 36.76 |
| CDY31677 | Canola | cytosol | 25.53 | 36.55 |
| CDY01347 | Canola | nucleus | 35.11 | 36.4 |
| CDY31858 | Canola | nucleus | 35.11 | 36.26 |
| CDY29494 | Canola | nucleus | 35.11 | 36.13 |
| CDY65376 | Canola | nucleus | 29.08 | 29.82 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | UniProt:A0A078FIG6 | InterPro:AT-hook_nuclear | EnsemblPlants:CDY12779 | ProteinID:CDY12779 |
| ProteinID:CDY12779.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00070377001 | InterPro:IPR005175 | PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF3 | SUPFAM:SSF117856 | UniParc:UPI0004EEDFAB | SEG:seg | : |
Description
BnaC04g28620DAT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIG6]
Coordinates
chrLK032026:+:857909..858757
Molecular Weight (calculated)
29173.1 Da
IEP (calculated)
6.278
GRAVY (calculated)
-0.350
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPWWTNQS GLAGMVDHST SSSHHHQSLL TKGDLGIAMN PSQENDQDDE DDPREGAVEV VNRRPRGRPP GSKNKPKAPV FVTRDSPNAL HSHVMEISDG
101: SDVADTIAHF SRRRQRGVCV ISGTGSVANV TLRQAAAPGG VVSLQGRFEI LSLTGAFLPG PAPPGSTGLT VYLAGVQGQV LGGSVVGPLV AIGSVMVIAA
201: TFSNATYERL PIEDEEDGGG GAVGGSRQIH GGGDSPPGIG SSLPDPSGMA GPGYNLPPHL IPNGAGQLGH EPYNWVHARP PY
101: SDVADTIAHF SRRRQRGVCV ISGTGSVANV TLRQAAAPGG VVSLQGRFEI LSLTGAFLPG PAPPGSTGLT VYLAGVQGQV LGGSVVGPLV AIGSVMVIAA
201: TFSNATYERL PIEDEEDGGG GAVGGSRQIH GGGDSPPGIG SSLPDPSGMA GPGYNLPPHL IPNGAGQLGH EPYNWVHARP PY
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.