Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31677 | Canola | cytosol | 95.31 | 92.89 |
| CDY72485 | Canola | nucleus | 84.38 | 59.34 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 83.85 | 58.97 |
| AT2G35270.1 | Thale cress | nucleus | 87.5 | 58.95 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 86.98 | 58.39 |
| CDX90445 | Canola | plastid | 58.85 | 41.24 |
| CDX78802 | Canola | cytosol | 59.9 | 39.52 |
| CDY54780 | Canola | cytosol | 59.9 | 39.38 |
| GSMUA_Achr8P14790_001 | Banana | plastid | 53.65 | 36.92 |
| CDX79838 | Canola | plastid | 40.1 | 29.62 |
| CDY53650 | Canola | plastid | 40.1 | 29.62 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 44.27 | 29.51 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 44.27 | 29.41 |
| CDY14862 | Canola | plastid | 39.06 | 28.74 |
| CDY70947 | Canola | plastid | 38.02 | 27.97 |
| CDY64701 | Canola | nucleus | 44.27 | 27.33 |
| CDY37040 | Canola | nucleus | 43.75 | 27.27 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 39.58 | 27.24 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 39.58 | 26.95 |
| CDY27387 | Canola | nucleus | 43.75 | 26.92 |
| CDY18931 | Canola | nucleus | 43.23 | 26.86 |
| CDX74739 | Canola | nucleus | 43.23 | 26.77 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 43.23 | 26.43 |
| CDY20404 | Canola | nucleus | 36.98 | 26.2 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 41.15 | 26.16 |
| CDX87591 | Canola | nucleus | 38.02 | 26.07 |
| CDY45983 | Canola | nucleus | 39.06 | 26.04 |
| CDX98771 | Canola | nucleus | 42.71 | 25.87 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 40.62 | 25.83 |
| CDY41289 | Canola | nucleus | 42.19 | 25.71 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 42.19 | 25.71 |
| CDX94128 | Canola | nucleus | 42.71 | 25.08 |
| CDX68095 | Canola | cytosol | 34.9 | 24.81 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 35.42 | 24.64 |
| CDX96613 | Canola | nucleus | 38.02 | 24.25 |
| CDY04391 | Canola | nucleus | 40.1 | 23.55 |
| CDY45266 | Canola | plastid | 25.0 | 23.41 |
| CDX83182 | Canola | cytosol | 29.69 | 23.27 |
| CDY21451 | Canola | cytosol | 29.69 | 23.27 |
| CDX85952 | Canola | cytosol | 32.81 | 23.16 |
| CDY53687 | Canola | nucleus | 35.42 | 22.82 |
| CDY68242 | Canola | plastid | 34.9 | 22.56 |
| CDY60321 | Canola | plastid | 34.38 | 22.3 |
| CDY41211 | Canola | plastid | 33.85 | 22.03 |
| CDY33658 | Canola | nucleus | 33.33 | 21.92 |
| CDX76085 | Canola | plastid | 34.9 | 21.82 |
| CDY31511 | Canola | nucleus | 30.21 | 21.56 |
| CDY02949 | Canola | plastid | 34.38 | 21.5 |
| CDY01347 | Canola | nucleus | 29.69 | 20.96 |
| CDY31858 | Canola | nucleus | 29.69 | 20.88 |
| CDY29494 | Canola | nucleus | 29.69 | 20.8 |
| CDY65376 | Canola | nucleus | 25.52 | 17.82 |
Protein Annotations
| EnsemblPlants:CDX84222 | EnsemblPlantsGene:GSBRNA2T00141275001 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF21 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | ProteinID:CDX84222 |
| ProteinID:CDX84222.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0004EE419E | MapMan:35.1 | : |
Description
BnaC04g09840D
Coordinates
chrLK031836:-:807190..808032
Molecular Weight (calculated)
19775.1 Da
IEP (calculated)
5.896
GRAVY (calculated)
-0.151
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLDLGTTS RYVHNVEGGG VGQFSTDNHH GDDAGGNHHH NHNHHQGTVT NVSIRQPTAV GAVVTLRGTF EILSLSGSFL PPPAPPGATN LTIFLAGAQG
101: QVVGGNVVGE LMAAGPVMVM AASFTNVAYE RLPLDEHEEQ LQVQSGGGNM YTEATNGGGG GSLPFFNLPI SLPHMGVENW PGNSSGACRA PF
101: QVVGGNVVGE LMAAGPVMVM AASFTNVAYE RLPLDEHEEQ LQVQSGGGNM YTEATNGGGG GSLPFFNLPI SLPHMGVENW PGNSSGACRA PF
001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF
Arabidopsis Description
AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.