Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79599 | Canola | cytosol, peroxisome, plastid | 98.17 | 98.17 |
| AT2G35270.1 | Thale cress | nucleus | 92.31 | 88.42 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 91.21 | 87.06 |
| CDX84222 | Canola | cytosol | 59.34 | 84.38 |
| CDY31677 | Canola | cytosol | 60.81 | 84.26 |
| Bra023007.1-P | Field mustard | cytosol, nucleus, peroxisome | 100.0 | 80.53 |
| CDX90445 | Canola | plastid | 63.37 | 63.14 |
| CDX78802 | Canola | cytosol | 66.3 | 62.2 |
| CDY54780 | Canola | cytosol | 66.3 | 61.99 |
| GSMUA_Achr8P14790_001 | Banana | plastid | 59.34 | 58.06 |
| CDX79838 | Canola | plastid | 43.22 | 45.38 |
| CDY53650 | Canola | plastid | 43.22 | 45.38 |
| CDY14862 | Canola | plastid | 42.49 | 44.44 |
| CDY70947 | Canola | plastid | 42.12 | 44.06 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 50.55 | 43.81 |
| CDX98771 | Canola | nucleus | 50.55 | 43.53 |
| CDY41289 | Canola | nucleus | 50.18 | 43.49 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 45.05 | 42.71 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 45.05 | 42.56 |
| CDY37040 | Canola | nucleus | 47.99 | 42.53 |
| CDX94128 | Canola | nucleus | 50.55 | 42.2 |
| CDY64701 | Canola | nucleus | 47.99 | 42.12 |
| CDY18931 | Canola | nucleus | 47.62 | 42.07 |
| CDY27387 | Canola | nucleus | 47.99 | 41.99 |
| CDX74739 | Canola | nucleus | 47.62 | 41.94 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 46.15 | 41.72 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 47.99 | 41.72 |
| CDY20404 | Canola | nucleus | 41.39 | 41.7 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 45.42 | 41.06 |
| CDY45983 | Canola | nucleus | 42.86 | 40.62 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 41.39 | 40.5 |
| CDX87591 | Canola | nucleus | 41.39 | 40.36 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 41.39 | 40.07 |
| CDY45266 | Canola | plastid | 30.04 | 40.0 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 39.56 | 39.13 |
| CDX68095 | Canola | cytosol | 38.46 | 38.89 |
| CDY04391 | Canola | nucleus | 46.52 | 38.84 |
| CDY21451 | Canola | cytosol | 34.43 | 38.37 |
| CDX96613 | Canola | nucleus | 42.12 | 38.21 |
| CDX83182 | Canola | cytosol | 34.07 | 37.96 |
| CDY31511 | Canola | nucleus | 36.63 | 37.17 |
| CDX85952 | Canola | cytosol | 37.0 | 37.13 |
| CDY68242 | Canola | plastid | 39.93 | 36.7 |
| CDY33658 | Canola | nucleus | 39.19 | 36.64 |
| CDY41211 | Canola | plastid | 38.83 | 35.93 |
| CDY31858 | Canola | nucleus | 35.9 | 35.9 |
| CDY29494 | Canola | nucleus | 35.9 | 35.77 |
| CDY01347 | Canola | nucleus | 35.53 | 35.66 |
| CDY53687 | Canola | nucleus | 38.83 | 35.57 |
| CDY60321 | Canola | plastid | 38.46 | 35.47 |
| CDX76085 | Canola | plastid | 39.19 | 34.85 |
| CDY02949 | Canola | plastid | 38.1 | 33.88 |
| CDY65376 | Canola | nucleus | 30.4 | 30.18 |
Protein Annotations
| EnsemblPlants:CDY72485 | EnsemblPlantsGene:GSBRNA2T00030056001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF21 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDY72485 | ProteinID:CDY72485.1 | SEG:seg |
| SUPFAM:SSF117856 | UniParc:UPI0004EF0B45 | UniProt:A0A078K178 | MapMan:35.1 | : | : |
Description
BnaCnng77890DBnaCnng77890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K178]
Coordinates
chrLK051319:+:962..1783
Molecular Weight (calculated)
27925.1 Da
IEP (calculated)
6.861
GRAVY (calculated)
-0.158
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLDLGSTS RYVHNVGQFS TDNHHEDDGG AGGNHHHQGL DLIVSNDNSG LGGGGGGGSG DLVMRRPRGR PAGSKNKPKP PTIVTRESAN TLRAHILEVG
101: SGFDVFECIS TYARRRQRGI CVMSGTGTVT NVSIRQPTAV GAVLTLRGTF EILSLSGSFL PPPAPPGATS LTIFLAGAQG QVVGGNVVGE LMAAGPVMVM
201: AASFTNVAYE RLPLDEHEEQ LLVQSGGGGG GNIYSEATGG GGGLPFFSLP MSLPHMGGEH WPGNSAGTGR APF
101: SGFDVFECIS TYARRRQRGI CVMSGTGTVT NVSIRQPTAV GAVLTLRGTF EILSLSGSFL PPPAPPGATS LTIFLAGAQG QVVGGNVVGE LMAAGPVMVM
201: AASFTNVAYE RLPLDEHEEQ LLVQSGGGGG GNIYSEATGG GGGLPFFSLP MSLPHMGGEH WPGNSAGTGR APF
001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF
Arabidopsis Description
AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.