CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76085	Canola	plastid	97.39	97.39
CDY53687	Canola	nucleus	85.99	88.59
CDY60321	Canola	plastid	85.02	88.18
CDY68242	Canola	plastid	83.71	86.53
AT3G55560.1	Thale cress	plastid	87.3	86.45
CDY41211	Canola	plastid	82.08	85.42
KRH73062	Soybean	cytosol	42.02	56.33
KRH15076	Soybean	nucleus	31.6	55.75
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	46.25	54.2
KRH31005	Soybean	nucleus	50.49	53.63
TraesCS4A01G094700.1	Wheat	cytosol, nucleus, plastid	43.0	51.56
KRG97871	Soybean	nucleus	50.49	51.32
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	42.67	51.17
TraesCS4D01G210500.1	Wheat	cytosol, nucleus, plastid	42.67	51.17
Os03t0270000-01	Rice	nucleus	43.0	51.16
CDY23160	Canola	cytosol, nucleus, vacuole	46.25	50.9
HORVU4Hr1G060280.1	Barley	cytosol, nucleus, plastid	42.35	50.78
CDY12779	Canola	cytosol, nucleus, vacuole	46.58	50.71
VIT_13s0019g02080.t01	Wine grape	nucleus	52.12	48.93
GSMUA_Achr11P...	Banana	nucleus	46.25	48.3
EER95114	Sorghum	nucleus	42.67	48.16
Zm00001d028577_P001	Maize	nucleus	42.35	47.62
GSMUA_Achr7P10630_001	Banana	plastid	44.63	47.08
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	46.58	45.54
Solyc05g053000.1.1	Tomato	nucleus	45.28	44.41
GSMUA_Achr6P01060_001	Banana	nucleus	39.74	43.57
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	40.39	43.06
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	40.07	42.86
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	40.07	42.56
CDX87591	Canola	nucleus	38.11	41.79
CDX90445	Canola	plastid	37.13	41.61
CDY70947	Canola	plastid	35.18	41.38
GSMUA_Achr9P28280_001	Banana	plastid	40.39	41.33
CDY37040	Canola	nucleus	41.37	41.23
CDY53650	Canola	plastid	34.85	41.15
CDX79838	Canola	plastid	34.85	41.15
CDY18931	Canola	nucleus	41.37	41.1
CDY14862	Canola	plastid	34.85	41.0
CDX74739	Canola	nucleus	41.37	40.97
GSMUA_Achr7P15000_001	Banana	nucleus	37.13	40.86
CDY64701	Canola	nucleus	41.37	40.84
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	41.69	40.76
CDY27387	Canola	nucleus	41.37	40.71
CDY20404	Canola	nucleus	35.83	40.59
CDY45266	Canola	plastid	27.04	40.49
CDY21451	Canola	cytosol	31.92	40.0
CDX83182	Canola	cytosol	31.6	39.59
CDX78802	Canola	cytosol	37.46	39.52
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	35.5	39.49
CDY45983	Canola	nucleus	36.81	39.24
CDX68095	Canola	cytosol	34.2	38.89
CDX79599	Canola	cytosol, peroxisome, plastid	34.53	38.83
CDY54780	Canola	cytosol	36.81	38.7
CDY72485	Canola	nucleus	33.88	38.1
CDX96613	Canola	nucleus	37.13	37.87
CDY59041	Canola	cytosol, nucleus, peroxisome	34.85	37.41
CDY41289	Canola	nucleus	38.11	37.14
CDX82978	Canola	cytosol, nucleus, plastid	38.11	37.14
CDY33658	Canola	nucleus	35.18	36.99
CDY31511	Canola	nucleus	32.25	36.8
CDX85952	Canola	cytosol	32.57	36.76
CDX75499	Canola	cytosol, nucleus, peroxisome	35.83	36.42
CDX98771	Canola	nucleus	37.46	36.28
CDX69136	Canola	cytosol, nucleus, peroxisome	35.5	36.09
CDY01347	Canola	nucleus	31.6	35.66
CDY29494	Canola	nucleus	31.6	35.4
CDY04391	Canola	nucleus	37.46	35.17
CDX94128	Canola	nucleus	37.46	35.17
CDY31858	Canola	nucleus	31.27	35.16
CDX84222	Canola	cytosol	21.5	34.38
CDY31677	Canola	cytosol	21.82	34.01
CDY65376	Canola	nucleus	28.01	31.27

Protein Annotations

EnsemblPlants:CDY02949	EnsemblPlantsGene:GSBRNA2T00115230001	Gene3D:3.30.1330.80	InterPro:AT-hook_nuclear	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31100	PANTHER:PTHR31100:SF13	PFAM:PF03479	PFscan:PS51742	PIRSF:PIRSF016021	ProteinID:CDY02949
ProteinID:CDY02949.1	SEG:seg	SUPFAM:SSF117856	UniParc:UPI0004EABED1	MapMan:35.1	:

Description

BnaC04g25370D

Coordinates

chrLK031938:-:846987..847910

Molecular Weight (calculated)

32261.7 Da

IEP (calculated)

5.960

GRAVY (calculated)

-0.559

Length

307 amino acids

Sequence
(BLAST)

001: MANPWWVGNV AMGGVESPVT SSAPSMHHRS NNPSMPRSDP RLDHDFANNS GSPNTQTQTQ NSQEEPNSRD EVLAIELGSG SGSTGRRPRG RPPGSKNKPK
101: NPVVVSKESP NSLQSHVLEI ATGADVAEAL NAFARRRGRG VSVLSGSGLV TNVTLRQPAV SGGVVSLRGQ FEILSMCGAF LPTSGSPAAA AGLTVYLAGA
201: QGQVLGGGVA GPLIASGPVI VIAATFSNAT YERLPIEDEQ HQPQIEEAKK EKEKDDNESG NDGNEESMQP LPPPMYNMPP GFMPNGQQMA QHDVYWGAPP
301: PRGPPSY

Best Arabidopsis Sequence Match ( AT3G55560.1 )
(BLAST)

001: MANPWWVGNV AIGGVESPVT SSAPSLHHRN SNNNNPPTMT RSDPRLDHDF TTNNSGSPNT QTQSQEEQNS RDEQPAVEPG SGSGSTGRRP RGRPPGSKNK
101: PKSPVVVTKE SPNSLQSHVL EIATGADVAE SLNAFARRRG RGVSVLSGSG LVTNVTLRQP AASGGVVSLR GQFEILSMCG AFLPTSGSPA AAAGLTIYLA
201: GAQGQVVGGG VAGPLIASGP VIVIAATFCN ATYERLPIEE EQQQEQPLQL EDGKKQKEEN DDNESGNNGN EGSMQPPMYN MPPNFIPNGH QMAQHDVYWG
301: GPPPRAPPSY

Arabidopsis Description

AHL15AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VH84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.