Factsheet for PGSC0003DMT400044451

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036790
PGSC0003DMT400074101

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14465.1	PGSC0003DMT400036790	AT3G17860.1	21798944
AT4G14465.1	PGSC0003DMT400074101	AT3G17860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g089620.1.1	Tomato	nucleus	93.33	93.01
VIT_05s0049g00100.t01	Wine grape	cytosol	64.91	71.15
GSMUA_Achr11P...	Banana	cytosol	42.81	70.93
GSMUA_AchrUn_...	Banana	cytosol	41.05	70.06
KRH31728	Soybean	cytosol	65.26	68.89
GSMUA_Achr2P04080_001	Banana	cytosol	56.49	68.51
KRG90376	Soybean	nucleus	63.86	67.91
GSMUA_Achr5P19550_001	Banana	cytosol	63.16	66.67
Os08t0563200-01	Rice	cytosol	54.39	65.96
Zm00001d018508_P001	Maize	cytosol	56.49	65.71
PGSC0003DMT400073795	Potato	nucleus	68.42	65.66
KRH34516	Soybean	cytosol, nucleus, peroxisome	66.32	65.17
TraesCS4B01G001100.1	Wheat	cytosol, nucleus, peroxisome	56.14	64.0
Os02t0820800-00	Rice	cytosol, nucleus, peroxisome	58.95	63.16
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	62.11	62.99
CDY12779	Canola	cytosol, nucleus, vacuole	61.4	62.06
CDY23160	Canola	cytosol, nucleus, vacuole	60.7	62.01
KRG92293	Soybean	cytosol, mitochondrion, nucleus	65.26	61.39
Zm00001d031887_P001	Maize	nucleus	57.54	60.97
Zm00001d049906_P001	Maize	nucleus	56.49	60.75
KXG25365	Sorghum	nucleus	57.19	60.37
TraesCS6D01G383400.1	Wheat	cytosol, extracellular, peroxisome	60.35	59.31
TraesCS6A01G399200.1	Wheat	cytosol, extracellular, peroxisome	60.35	59.31
TraesCS4D01G001800.1	Wheat	nucleus	58.95	58.95
HORVU6Hr1G091740.1	Barley	cytosol	60.35	58.9
TraesCS6B01G439500.1	Wheat	cytosol, extracellular, peroxisome	60.35	58.7
TraesCS4A01G312400.1	Wheat	nucleus	58.6	58.6
HORVU6Hr1G010470.2	Barley	cytosol, nucleus, peroxisome	57.54	58.36
OQU85972	Sorghum	cytosol	60.7	58.25
HORVU4Hr1G000870.2	Barley	nucleus	58.25	57.84
TraesCS6B01G072300.1	Wheat	nucleus	57.19	57.8
TraesCS6A01G053800.1	Wheat	nucleus	56.84	57.45
TraesCS6D01G055500.1	Wheat	cytosol	56.49	57.09
PGSC0003DMT400045315	Potato	nucleus	44.21	57.01
Os07t0235200-01	Rice	endoplasmic reticulum, extracellular	35.09	52.91
PGSC0003DMT400010004	Potato	nucleus	48.77	47.44
PGSC0003DMT400004515	Potato	nucleus	37.19	47.32
PGSC0003DMT400044573	Potato	cytosol	41.4	47.01
PGSC0003DMT400002959	Potato	nucleus	42.46	45.66
PGSC0003DMT400025705	Potato	plastid	40.7	44.62
PGSC0003DMT400045203	Potato	nucleus	45.26	44.48
PGSC0003DMT400033248	Potato	nucleus	48.07	44.48
PGSC0003DMT400032509	Potato	nucleus	47.02	43.09
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	47.02	42.68
HORVU0Hr1G011700.1	Barley	cytosol	31.58	41.67
PGSC0003DMT400024250	Potato	cytosol, plastid	35.09	37.17
PGSC0003DMT400005182	Potato	nucleus	29.47	31.34

Protein Annotations

EntrezGene:102600277	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987
GO:GO:0042742	GO:GO:0045824	GO:GO:1900425	InterPro:IPR005175	UniProt:M1BG81	PFAM:PF03479
EnsemblPlantsGene:PGSC0003DMG400017252	PGSC:PGSC0003DMG400017252	EnsemblPlants:PGSC0003DMT400044451	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF3	SUPFAM:SSF117856	UniParc:UPI000295C2DD	RefSeq:XP_006354520.1	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017252]

Coordinates

chr9:+:55948233..55949381

Molecular Weight (calculated)

30108.3 Da

IEP (calculated)

6.029

GRAVY (calculated)

-0.547

Length

285 amino acids

Sequence
(BLAST)

001: MANWWGGQVG MSGLESGSCP PMLVTKQVSS GSSGENQEDN DRENGDHEPK EGAVEVGNRR PRGRPPGSKN KPKPPIFVTR DSPNALRSHV MEVAGGTDVA
101: DCIAQFARRR QRGVCVLSGN GSVANVTLRQ PSSPGAIVLQ GRFEILSLTG AFLPGPAPPG STRLTVYLAG GQGQVVGGSI VGPLIAAGPV MIIAATFSNA
201: TYERLPLEEE EEVGGDRPSQ SQVPAENSPP TLGSSDGRPQ QQHQQQHELP DPSSLPIYNF TPNLLPNGGQ LNHDAYAWAN PRPPY

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.