Factsheet for PGSC0003DMT400032509

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007560.1.1	Tomato	nucleus	97.75	95.3
PGSC0003DMT400045315	Potato	nucleus	58.84	82.81
PGSC0003DMT400010004	Potato	nucleus	77.17	81.91
VIT_02s0025g05100.t01	Wine grape	nucleus	71.7	73.84
KRH57320	Soybean	nucleus	64.95	71.38
KRH04051	Soybean	nucleus	65.27	70.73
KRH77431	Soybean	nucleus	66.24	68.67
KRH28008	Soybean	nucleus	65.59	68.46
PGSC0003DMT400033248	Potato	nucleus	59.49	60.06
HORVU6Hr1G037630.1	Barley	nucleus	54.66	55.02
HORVU6Hr1G037640.1	Barley	nucleus	54.66	55.02
Zm00001d016132_P001	Maize	nucleus	54.34	54.69
TraesCS6D01G167600.1	Wheat	nucleus	54.34	54.69
TraesCS6B01G209300.1	Wheat	nucleus	54.34	54.69
TraesCS6A01G176200.1	Wheat	nucleus	54.34	54.69
Os02t0448000-00	Rice	nucleus	54.34	53.48
EES04848	Sorghum	nucleus	54.98	52.29
Zm00001d053429_P001	Maize	nucleus	53.38	51.88
PGSC0003DMT400044573	Potato	cytosol	41.16	51.0
PGSC0003DMT400002959	Potato	nucleus	42.12	49.43
PGSC0003DMT400004515	Potato	nucleus	35.37	49.11
PGSC0003DMT400025705	Potato	plastid	40.19	48.08
PGSC0003DMT400073795	Potato	nucleus	45.02	47.14
PGSC0003DMT400044451	Potato	nucleus	43.09	47.02
PGSC0003DMT400045203	Potato	nucleus	43.73	46.9
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	38.91	38.53
PGSC0003DMT400024250	Potato	cytosol, plastid	29.26	33.83
PGSC0003DMT400005182	Potato	nucleus	25.72	29.85

Protein Annotations

EntrezGene:102578919	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:M1AXJ4	PFAM:PF03479
EnsemblPlantsGene:PGSC0003DMG400012486	PGSC:PGSC0003DMG400012486	EnsemblPlants:PGSC0003DMT400032509	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	UniParc:UPI0002952E5C	RefSeq:XP_006358367.1	SEG:seg

Description

ESC [Source:PGSC_GENE;Acc:PGSC0003DMG400012486]

Coordinates

chr8:-:310786..312280

Molecular Weight (calculated)

33419.7 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.687

Length

311 amino acids

Sequence
(BLAST)

001: MDPSNNSLPP PFHTRNFNLQ HHNNHHHHQQ QQQLQFQHSS EDEQSGTSGL NMSGQKRDRE ENNNNNDNNN NNYNDSNVDE STDELGVNGS HRDGEFNRRP
101: RGRPAGSKNK PKAPIIITRD SANALRTHVM EIADGCDIME SVSNFSRRRQ RGVCIMSGTG NVTNVNLRQP ASPGAIATLH GRFEILSLAG SFLPPPAPPA
201: ASGLTIYLAG GQGQVVGGCV VGSLMASGPV VIMAASFSNA AYERLPLDED DSNQLPVQGG SLGSPGATIA PGGQQQQLLA DPSLFHGMPP NLLNNVQLPS
301: EAYWATGRPP F

Best Arabidopsis Sequence Match ( AT4G22810.1 )
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY

Arabidopsis Description

AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.