Factsheet for TraesCS6B01G209300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G167600.1	Wheat	nucleus	99.03	99.03
HORVU6Hr1G037630.1	Barley	nucleus	98.38	98.38
HORVU6Hr1G037640.1	Barley	nucleus	98.38	98.38
TraesCS6A01G176200.1	Wheat	nucleus	98.38	98.38
Os02t0448000-00	Rice	nucleus	88.35	86.39
Zm00001d016132_P001	Maize	nucleus	82.2	82.2
EES04848	Sorghum	nucleus	86.41	81.65
Zm00001d053429_P001	Maize	nucleus	82.85	80.0
Solyc06g060500.1.1	Tomato	nucleus	46.6	65.45
PGSC0003DMT400045315	Potato	nucleus	46.28	64.71
VIT_02s0025g05100.t01	Wine grape	nucleus	58.9	60.26
KRH57320	Soybean	nucleus	54.69	59.72
KRH28008	Soybean	nucleus	57.28	59.4
Solyc08g079720.2.1	Tomato	nucleus	55.99	59.25
PGSC0003DMT400010004	Potato	nucleus	55.66	58.7
KRH04051	Soybean	nucleus	54.37	58.54
KRH77431	Soybean	nucleus	55.66	57.33
PGSC0003DMT400032509	Potato	nucleus	54.69	54.34
Solyc08g007560.1.1	Tomato	nucleus	55.34	53.6
TraesCS4B01G001100.1	Wheat	cytosol, nucleus, peroxisome	43.37	53.6
TraesCS7B01G187300.1	Wheat	cytosol, nucleus, peroxisome	48.87	53.17
TraesCS2B01G470600.1	Wheat	cytosol, nucleus, peroxisome	49.19	48.56
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	40.13	48.44
TraesCS6B01G072300.1	Wheat	nucleus	43.69	47.87
TraesCS6B01G439500.1	Wheat	cytosol, extracellular, peroxisome	42.07	44.37
TraesCS6B01G306100.1	Wheat	plastid	46.6	43.77
TraesCS1B01G056000.1	Wheat	mitochondrion	43.69	41.54
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	42.39	40.68
TraesCS3B01G198900.1	Wheat	plastid	26.86	39.52
TraesCS7B01G297300.1	Wheat	cytosol	33.98	35.96
TraesCS5B01G243200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.39	28.87
TraesCS3B01G551700.1	Wheat	cytosol	27.51	28.52

Protein Annotations

EnsemblPlants:TraesCS6B01G209300.1	EnsemblPlantsGene:TraesCS6B01G209300	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100
PANTHER:PTHR31100:SF15	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	TIGR:cd11378
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:275925538..275926467

Molecular Weight (calculated)

31691.2 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.342

Length

309 amino acids

Sequence
(BLAST)

001: MDPVTASIHG HHLPPPFNTR DFHHHLQQQQ LHLKSEDDHG GGSPFGGHGT KHGHEDDENS GNGHGSGGEL ALISPSGGGL QDGGENGSRR PRGRPAGSKN
101: KPKPPIIITR DSANTLRTHV MEVAGGCDIS ESITAFARRR QRGVCVLSGA GTVTNVTLRQ PASQGAVVAL HGRFEILSLS GSFLPPPAPP EATGLTVYLA
201: GGKGQVVGGT VVGSLTAAGP VVIMAASFAN AVYERLPLEE DELLAAQGQA DSTGMLAAGQ QASQMAGGDV DPSLFEGLPP NLLGNVQLPP EAAGCRWNPG
301: TAGGRPSPF

Best Arabidopsis Sequence Match ( AT4G22810.1 )
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY

Arabidopsis Description

AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.