Factsheet for PGSC0003DMT400045315

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060500.1.1	Tomato	nucleus	98.64	99.09
PGSC0003DMT400010004	Potato	nucleus	85.07	64.16
VIT_02s0025g05100.t01	Wine grape	nucleus	80.54	58.94
PGSC0003DMT400032509	Potato	nucleus	82.81	58.84
KRH57320	Soybean	nucleus	74.66	58.3
KRH04051	Soybean	nucleus	74.66	57.49
KRH77431	Soybean	nucleus	74.66	55.0
KRH28008	Soybean	nucleus	73.76	54.7
PGSC0003DMT400044573	Potato	cytosol	57.47	50.6
PGSC0003DMT400033248	Potato	nucleus	70.14	50.32
PGSC0003DMT400002959	Potato	nucleus	57.01	47.55
PGSC0003DMT400025705	Potato	plastid	55.2	46.92
PGSC0003DMT400004515	Potato	nucleus	47.51	46.88
HORVU6Hr1G037630.1	Barley	nucleus	64.71	46.28
TraesCS6D01G167600.1	Wheat	nucleus	64.71	46.28
TraesCS6B01G209300.1	Wheat	nucleus	64.71	46.28
HORVU6Hr1G037640.1	Barley	nucleus	64.71	46.28
TraesCS6A01G176200.1	Wheat	nucleus	64.25	45.95
Zm00001d016132_P001	Maize	nucleus	64.25	45.95
Os02t0448000-00	Rice	nucleus	64.71	45.25
PGSC0003DMT400045203	Potato	nucleus	58.82	44.83
PGSC0003DMT400073795	Potato	nucleus	60.18	44.78
PGSC0003DMT400044451	Potato	nucleus	57.01	44.21
Zm00001d053429_P001	Maize	nucleus	63.8	44.06
EES04848	Sorghum	nucleus	65.16	44.04
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	50.68	35.67
PGSC0003DMT400024250	Potato	cytosol, plastid	40.72	33.46
PGSC0003DMT400005182	Potato	nucleus	36.2	29.85

Protein Annotations

EntrezGene:102597822	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:M1BHG3	PFAM:PF03479
EnsemblPlantsGene:PGSC0003DMG400017578	PGSC:PGSC0003DMG400017578	EnsemblPlants:PGSC0003DMT400045315	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	UniParc:UPI0002961D24	RefSeq:XP_006363907.1	SEG:seg

Description

ESC [Source:PGSC_GENE;Acc:PGSC0003DMG400017578]

Coordinates

chr6:-:43463145..43464163

Molecular Weight (calculated)

23197.7 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.338

Length

221 amino acids

Sequence
(BLAST)

001: MDDEGEMSRR PRGRPAGSKN KPKPPIIINR DSANALRTHI IEIADGCDVM ESVSNFSRRR QRGVCIMSGT GNVTNVNLKQ PASSGEIVTL HGRFEILSLS
101: GSFLPPPAPP AASGLTIYLA GGQGQVVGGS VVGALMASGP VVIMGASFSN AAYERLPLEE DDPNNHPLPM PGGPLGSPGG QQQQLLGGDP SMFHGTPPPN
201: LLNSSMQLPH EGYWSTGRPP F

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.