Factsheet for VIT_02s0012g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90445	Canola	plastid	71.28	73.36
AT4G17800.1	Thale cress	cytosol	74.82	72.26
KRH58197	Soybean	cytosol	70.57	72.1
PGSC0003DMT400002959	Potato	nucleus	67.02	71.32
Bra012639.1-P	Field mustard	cytosol	72.69	70.45
CDX78802	Canola	cytosol	72.69	70.45
KRH04340	Soybean	cytosol	62.41	70.12
Bra040183.1-P	Field mustard	cytosol	72.69	69.97
CDY54780	Canola	cytosol	71.99	69.52
Solyc08g077010.1.1	Tomato	cytosol	70.92	69.44
PGSC0003DMT400045203	Potato	nucleus	70.57	68.62
GSMUA_Achr5P03390_001	Banana	nucleus	58.87	64.09
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	56.03	61.96
VIT_15s0045g01130.t01	Wine grape	cytosol, plastid	52.13	59.76
GSMUA_Achr5P13920_001	Banana	nucleus	45.74	56.83
VIT_05s0049g00100.t01	Wine grape	cytosol	49.65	53.85
VIT_02s0025g05100.t01	Wine grape	nucleus	54.96	51.32
VIT_15s0048g00780.t01	Wine grape	nucleus	54.26	51.0
VIT_03s0038g04110.t01	Wine grape	nucleus	50.71	49.48
VIT_14s0081g00670.t01	Wine grape	mitochondrion	49.65	48.11
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	45.04	47.39
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	46.45	41.46
VIT_13s0019g02080.t01	Wine grape	nucleus	45.74	39.45
VIT_18s0001g07380.t01	Wine grape	nucleus	31.91	36.73

Protein Annotations

EntrezGene:100262516	wikigene:100262516	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:AM484087	ProteinID:CAN83987
ProteinID:CAN83987.1	ProteinID:CCB57926	ProteinID:CCB57926.1	UniProt:F6HTB6	EMBL:FN596247	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	EntrezGene:LOC100262516	wikigene:LOC100262516
PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF21	SUPFAM:SSF117856
UniParc:UPI00015C90E4	ArrayExpress:VIT_02s0012g00880	EnsemblPlantsGene:VIT_02s0012g00880	EnsemblPlants:VIT_02s0012g00880.t01	unigene:Vvi.20292	RefSeq:XP_002281411
RefSeq:XP_002281411.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:6785091..6786501

Molecular Weight (calculated)

29508.8 Da

IEP (calculated)

6.714

GRAVY (calculated)

-0.266

Length

282 amino acids

Sequence
(BLAST)

001: MAGLDLGTAS RYIHQLHRSD LHLQRPQDSD EDNNTNRGGA QYSGDHQDDV AHHGLELVSA NAGPGDIVAR RPRGRPPGSK NRPKPPVIIT RESANTLRAH
101: ILEVGNGCDV FDCVATYARR RQRGICVLSG SGTVTNVSIR QPAAAGAILT LHGRFEILSL SGSFLPPPAP PGATSLTIFL AGGQGQVVGG SVVGELTAAG
201: PVIVIAASFT NVAYERLPLD EEEPLQMQQQ VPQSSGGGGG GINNPFPDPS AGLPFFNLPL NMPNCQLPVD GWAGNSGARP PF

Best Arabidopsis Sequence Match ( AT4G17800.1 )
(BLAST)

001: MAGLDLGTAF RYVNHQLHRP DLHLHHNSSS DDVTPGAGMG HFTVDDEDNN NNHQGLDLAS GGGSGSSGGG GGHGGGGDVV GRRPRGRPPG SKNKPKPPVI
101: ITRESANTLR AHILEVTNGC DVFDCVATYA RRRQRGICVL SGSGTVTNVS IRQPSAAGAV VTLQGTFEIL SLSGSFLPPP APPGATSLTI FLAGGQGQVV
201: GGSVVGELTA AGPVIVIAAS FTNVAYERLP LEEDEQQQQL GGGSNGGGNL FPEVAAGGGG GLPFFNLPMN MQPNVQLPVE GWPGNSGGRG PF

Arabidopsis Description

AHL23AT-hook motif nuclear-localized protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O23620]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.