Factsheet for Os01t0953801-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
peroxisome 2
mitochondrion 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88209	Sorghum	peroxisome	63.4	67.2
Zm00001d042060_P001	Maize	plastid	59.62	64.49
TraesCS3A01G490800.1	Wheat	cytosol	61.13	57.45
TraesCS3D01G496700.1	Wheat	cytosol	62.26	55.0
TraesCS3B01G551700.1	Wheat	cytosol	60.75	54.03
HORVU3Hr1G108820.1	Barley	mitochondrion	43.4	44.92
Os08t0563200-01	Rice	cytosol	34.34	38.72
Os03t0270000-01	Rice	nucleus	36.23	37.21
Os02t0820800-00	Rice	cytosol, nucleus, peroxisome	34.34	34.21
Os08t0159700-01	Rice	cytosol	35.47	32.53
Os01t0246601-00	Rice	plastid	27.92	32.46
Os04t0590200-01	Rice	cytosol	35.09	30.49
Os07t0235200-01	Rice	endoplasmic reticulum, extracellular	21.13	29.63
Os09t0464300-00	Rice	nucleus	35.85	28.44
Os08t0478466-01	Rice	nucleus	34.72	28.4
Os06t0326900-01	Rice	nucleus	33.58	27.64
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	34.72	27.38
Os02t0448000-00	Rice	nucleus	32.45	27.22
Os06t0136900-01	Rice	nucleus	32.45	26.22

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:9270289	InterPro:AT-hook_nuclear	ProteinID:BAB64709.1	ProteinID:BAH91476.1
ProteinID:BAS76268.1	ProteinID:EEE56019.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR005175	EnsemblPlantsGene:Os01g0953801	EnsemblPlants:Os01t0953801-00	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF9	UniProt:Q941Y9	SUPFAM:SSF117856
UniParc:UPI00000A973C	RefSeq:XP_015640334.1	SEG:seg	:	:	:

Description

Domain of unknown function DUF296 domain containing protein. (Os01t0953801-00)

Coordinates

chr1:+:42012784..42013581

Molecular Weight (calculated)

26639.7 Da

IEP (calculated)

8.259

GRAVY (calculated)

-0.123

Length

265 amino acids

Sequence
(BLAST)

001: MADEGSSRAE LIEASPAPAL DLPSPPRKPR GRPLGSKNKP KPPVVVTRES EAAMRPVVLE LGAGCEVAAA VAAFARRRRV GVSVLCGRGT VAAVTLRLPT
101: SPPAAVKLHG RFEVLSLSGT VLPSAAGEGA APPPPFSVSL AGAGGQVIGG TLAGEMTTAD GLVVVAATFG SAEVHRLPAD EDDEATGSRG GEERRHPQQQ
201: PPQTVAATSA VDVGLLGYGG GVGVAGGASG GQVGRHQQQQ QQAEMVLWAQ SPGSVGPAHP ATSRY

Best Arabidopsis Sequence Match ( AT5G49700.1 )
(BLAST)

001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY

Arabidopsis Description

AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.