Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G139800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 94.47 | 94.97 |
| TraesCS6D01G129200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 93.16 | 93.65 |
| HORVU6Hr1G027330.1 | Barley | extracellular | 89.47 | 89.01 |
| Os05t0293500-01 | Rice | extracellular | 67.89 | 69.17 |
| KXG22892 | Sorghum | cytosol | 47.37 | 64.98 |
| TraesCS2B01G024500.2 | Wheat | golgi | 55.0 | 43.45 |
| TraesCS6B01G211900.1 | Wheat | extracellular, golgi, vacuole | 47.63 | 42.59 |
| TraesCS1B01G161000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 53.16 | 42.44 |
| TraesCS7B01G261700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.16 | 41.22 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G168400.1 | EnsemblPlantsGene:TraesCS6B01G168400 | Gene3D:2.160.20.10 | InterPro:AmbAllergen | InterPro:IPR012334 | InterPro:Pec_lyase |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | KEGG:00040+4.2.2.2 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF22 | PFAM:PF00544 |
| PRINTS:PR00807 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00656 | SUPFAM:SSF51126 | MapMan:21.3.5.2 |
Description
No Description!
Coordinates
chr6B:-:179337312..179340028
Molecular Weight (calculated)
40865.4 Da
IEP (calculated)
8.081
GRAVY (calculated)
-0.180
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MAILLFFIFT SILSISYSSP LPVNASGNIS VRRQRTPEQC GTGNQVDDCW RCDPGWADNR QRLADCVIGF GRNAIGGKGG RTYVVTDPGD EDPANPAPGT
101: LRYGLVQDEP LWIIFACNMT IRPQREFVVS SHKTVDGRGA SVVVGEGGAC FTVRNQSNVI IHGITIRGCR PAPKSAKTGH LSDGDGVSIF GARDVWVDHC
201: TLEDCADGLV DVIAASTGVT VSNCLLTNHN KAMLLGHNDA YEDDRAMRVT VAFNRFGPGL VQRMPRCRFG VFHVVNNDYV NWGKYAIGGS ASPTILSRGN
301: RFCAGKEKEV TKRDGDPPKS EWQKWNWISD GDLMFNGAFF TASGRPGAEV KAPSFAKSAS FVAPMTASAG ALSCSKGSLC
101: LRYGLVQDEP LWIIFACNMT IRPQREFVVS SHKTVDGRGA SVVVGEGGAC FTVRNQSNVI IHGITIRGCR PAPKSAKTGH LSDGDGVSIF GARDVWVDHC
201: TLEDCADGLV DVIAASTGVT VSNCLLTNHN KAMLLGHNDA YEDDRAMRVT VAFNRFGPGL VQRMPRCRFG VFHVVNNDYV NWGKYAIGGS ASPTILSRGN
301: RFCAGKEKEV TKRDGDPPKS EWQKWNWISD GDLMFNGAFF TASGRPGAEV KAPSFAKSAS FVAPMTASAG ALSCSKGSLC
001: MAVLPTWLLA MMCLLFFVGA MENTTHDNIS SLPRSDETEW NQHAVTNPDE VADEVLALTE MSVRNHTERR KLGYFTCGTG NPIDDCWRCD PNWHKNRKRL
101: ADCGIGFGRN AIGGRDGRFY VVTDPRDDNP VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIVHGL
201: HIHDCKPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW IDHNSLSHCA DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYMRDKA MQVTIAYNHF
301: GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA
401: SSLSAKSSSL VGHITSDAGA LPCRRGRQCS S
101: ADCGIGFGRN AIGGRDGRFY VVTDPRDDNP VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIVHGL
201: HIHDCKPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW IDHNSLSHCA DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYMRDKA MQVTIAYNHF
301: GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA
401: SSLSAKSSSL VGHITSDAGA LPCRRGRQCS S
Arabidopsis Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178W464]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.