Factsheet for HORVU6Hr1G027330.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G139800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	90.05	91.01
TraesCS6D01G129200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	89.27	90.21
TraesCS6B01G168400.1	Wheat	plastid	89.01	89.47
Os05t0293500-01	Rice	extracellular	65.97	67.56
KXG22892	Sorghum	cytosol	47.38	65.34
HORVU2Hr1G002930.1	Barley	cytosol	37.7	52.55
HORVU5Hr1G005000.2	Barley	cytosol	41.62	46.63
HORVU6Hr1G038630.1	Barley	extracellular	45.81	43.21
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	48.69	41.89
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	52.62	41.27
HORVU2Hr1G002880.2	Barley	mitochondrion	52.88	39.61
HORVU7Hr1G019500.1	Barley	mitochondrion	47.91	35.19

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	UniProt:A0A287TNP8	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	EnsemblPlantsGene:HORVU6Hr1G027330
EnsemblPlants:HORVU6Hr1G027330.1	InterPro:IPR012334	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF22
InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000B489814	:	:	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A287TNP8]

Coordinates

chrchr6H:-:106173742..106174971

Molecular Weight (calculated)

40926.7 Da

IEP (calculated)

8.047

GRAVY (calculated)

-0.147

Length

382 amino acids

Sequence
(BLAST)

001: MAILLFLFFT SMLSISYCSP LPVNAYGSDI LVRRQQTLEH CGTGNPVDDC WRCDPGWADN RQRLADCAIG FGRNAMGGKG GRTYVVTNPG DEDPANPAPG
101: TLRHGLVQNE PLWIIFACNM TIRPKQELLV SSHKTVDGRG ASVVVGEGGA CFTVRNGSNV IIHGITIRGC RPAPKSSAKT SDLSDGDGIS LFGARDVWVD
201: RCTLESCADG LVDVIEASTS VTVSNCLLTK HNKAMLLGHN DAFEDDRAMR VTVAFNRFGP GLVQRMPRCR FGVFHVVNND YVNWGKYAIG GSASPTILSR
301: GNRFCAGKEK EVTKRDGDSP KSEWQKWSWI SDGDLMFNGA FFTASGGSGP EVKAPSFAKP ASLVAPMTAS AGALSCSKGS VC

Best Arabidopsis Sequence Match ( AT1G67750.1 )
(BLAST)

001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC

Arabidopsis Description

Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.