Factsheet for HORVU1Hr1G038220.7

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	82.96	84.87
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	82.55	84.1
TraesCS1A01G143600.1	Wheat	extracellular	82.34	83.54
Os10t0457200-01	Rice	plasma membrane	76.18	75.56
KXG38421	Sorghum	extracellular	72.28	73.03
Zm00001d032806_P001	Maize	cytosol, plastid	62.22	70.14
HORVU2Hr1G002930.1	Barley	cytosol	39.43	70.07
HORVU5Hr1G005000.2	Barley	cytosol	43.33	61.88
GSMUA_Achr4P25120_001	Banana	extracellular	56.47	61.52
Bra006976.1-P	Field mustard	cytosol	55.85	59.52
PGSC0003DMT400009869	Potato	cytosol	51.75	59.15
CDX73573	Canola	extracellular	56.26	57.56
CDX78152	Canola	extracellular	56.06	57.35
VIT_08s0007g04820.t01	Wine grape	plastid	57.29	57.06
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	55.03	57.02
GSMUA_Achr1P03320_001	Banana	plasma membrane	58.32	55.58
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	54.41	55.56
AT3G53190.1	Thale cress	extracellular	54.83	55.28
Solyc09g008380.2.1	Tomato	nucleus	54.62	55.07
CDX67560	Canola	plasma membrane	54.83	54.49
Bra028549.1-P	Field mustard	plasma membrane	54.83	54.49
HORVU6Hr1G027330.1	Barley	extracellular	41.27	52.62
HORVU2Hr1G002880.2	Barley	mitochondrion	53.39	50.98
CDY13312	Canola	plasma membrane	53.8	48.88
HORVU6Hr1G038630.1	Barley	extracellular	40.25	48.4
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	41.68	45.72
HORVU7Hr1G019500.1	Barley	mitochondrion	44.97	42.12

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	UniProt:A0A287F6C1	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	EnsemblPlantsGene:HORVU1Hr1G038220
EnsemblPlants:HORVU1Hr1G038220.7	InterPro:IPR012334	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11
InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI000B46C8A7	SEG:seg	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A287F6C1]

Coordinates

chrchr1H:+:264016464..264021439

Molecular Weight (calculated)

53364.5 Da

IEP (calculated)

7.465

GRAVY (calculated)

-0.207

Length

487 amino acids

Sequence
(BLAST)

001: MAGAPESILV ILLLPVLLLG AGASSLPLLN SSLPDPAAVV ADFHSKVATS RRRMQETAGV CMTGNPIDDC WRCTGTEWWK DRQRLADCGI GFGRNALGGK
101: GGPIYVVTDS SDRDPVNPAP GTLRYGAIQE GPLWIVFAAD MTIRLNEELL VNSYKTIDGR GANVHVAGGA CITLQYVSNI IIHNLHVHDC VPAGDANVRS
201: SPTHYGWRTR SDGDGISLFS ARDVWVDHCA LSRCADGLVD AIMGSTGITV SNSYFSHHDE VMLLGHSDGY LPDSGMQVTI AFNHFGVQLV QRMPRCRRGY
301: FHIVNNDYTA WEMYAIGGSA GPTINSQGNR YIAPANPNAK EVTKRVDTEE GQWNGWNWRT EGDMMVNGAF FVPSGEGMEN IYDKASSGVD PKSSALVDQL
401: TMGAGVLGGP RYGQWRSVRV RRVQLCRIGD RRWRQRVWFP WDGVCQQRRS GLPVSVDTIA DYFSCCSNMS CKTRLRHTNM VIMIQSG

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.