Factsheet for Solyc09g008380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009869	Potato	cytosol	85.92	97.42
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	66.25	68.09
Bra006976.1-P	Field mustard	cytosol	64.18	67.83
AT3G53190.1	Thale cress	extracellular	67.08	67.08
CDX73573	Canola	extracellular	66.05	67.02
CDX78152	Canola	extracellular	65.84	66.81
CDX67560	Canola	plasma membrane	67.7	66.73
VIT_08s0007g04820.t01	Wine grape	plastid	67.49	66.67
Bra028549.1-P	Field mustard	plasma membrane	67.29	66.33
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	64.39	65.2
Solyc11g008140.1.1	Tomato	plasma membrane	59.83	64.37
CDY13312	Canola	plasma membrane	66.25	59.7
Solyc05g014000.2.1	Tomato	extracellular, nucleus	49.48	59.6
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	57.14	57.98
GSMUA_Achr4P25120_001	Banana	extracellular	53.62	57.94
Solyc03g111690.2.1	Tomato	nucleus	48.24	57.82
TraesCS1A01G143600.1	Wheat	extracellular	57.35	57.71
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	48.03	57.43
Solyc06g071840.1.1	Tomato	vacuole	42.65	57.38
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	56.73	57.32
KXG38421	Sorghum	extracellular	56.73	56.85
Solyc06g083580.2.1	Tomato	nucleus	50.72	56.45
Os10t0457200-01	Rice	plasma membrane	56.94	56.01
Solyc05g055510.2.1	Tomato	plasma membrane	56.94	55.67
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	57.97	55.56
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	49.9	54.9
Zm00001d032806_P001	Maize	cytosol, plastid	49.07	54.86
Solyc09g091430.2.1	Tomato	nucleus	51.14	54.77
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	55.07	54.62
GSMUA_Achr1P03320_001	Banana	plasma membrane	52.17	49.32
Solyc03g058890.2.1	Tomato	extracellular	45.55	49.0
Solyc06g071020.2.1	Tomato	extracellular	42.65	47.36
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	42.44	47.13
Solyc03g058910.2.1	Tomato	extracellular, golgi	38.72	46.98
Solyc02g087670.2.1	Tomato	extracellular	43.27	46.86
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	41.82	46.01
Solyc05g007080.2.1	Tomato	extracellular	42.44	44.96
Solyc02g067450.2.1	Tomato	extracellular	39.75	31.17
Solyc02g080910.2.1	Tomato	extracellular	39.54	25.16

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:K4CQM6	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF21	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
EnsemblPlantsGene:Solyc09g008380.2	EnsemblPlants:Solyc09g008380.2.1	TMHMM:TMhelix	UniParc:UPI000276BEF2	SEG:seg	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4CQM6]

Coordinates

chr9:+:1844382..1849775

Molecular Weight (calculated)

53595.8 Da

IEP (calculated)

5.384

GRAVY (calculated)

-0.315

Length

483 amino acids

Sequence
(BLAST)

001: MFQISYIVVF LILTSFFPLG FGIFLNVTTL PGQHPDPESV ALEVNRKVNA SLSIFQSRRK MLSYTQSSCQ TGNPIDDCWR CDHSWQLNRQ RLADCAIGFG
101: QYALGGKGGR YYVVTSSSDP DPVDPPPGTL RYGVIQEEPL WIVFSASMEI KLSEELIFNS HKTLDGRGVN VHITGGGCIT LQYISNVIIH NIHVHHCYES
201: GDTNVRSSPT HFGYRGKSDG DGISIFGSRD IWIDHCSLSN CKDGLIDVVM GSTGITISNN HFSHHNEVML LGHNDDYLPD SGMQVTISFN HFGKKLIQRM
301: PRCRRGYIHV VNNDFTRWEM YAIGGSGNPT INSQGNRYIA PFDPFAKEVT KRVDTDEGKW RNWNWRSEGD VMANGAYFVA SGEEVEIKYE KAYSVEPKSA
401: DFIDQITLNA GVLIHRGSNS GKWTATTNND TESAGDDGGG EDLVAISGDS DDDYGGDEES RSSTIYSNFS LLFNLLMALL ALL

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.