Factsheet for Solyc06g071840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 7
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069632	Potato	vacuole	96.38	85.43
Solyc03g111690.2.1	Tomato	nucleus	85.52	76.18
KRH03893	Soybean	nucleus	83.01	73.4
KRH57176	Soybean	nucleus	82.17	72.66
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	80.22	70.59
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	79.94	70.34
CDY24847	Canola	endoplasmic reticulum, extracellular	79.39	70.2
Solyc05g014000.2.1	Tomato	extracellular, nucleus	78.27	70.07
CDY08948	Canola	endoplasmic reticulum, extracellular	79.11	69.95
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	79.11	69.95
CDY34310	Canola	endoplasmic reticulum, vacuole	78.83	69.7
CDY03419	Canola	endoplasmic reticulum, extracellular	78.83	69.7
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	78.83	69.7
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	78.83	69.36
CDY11033	Canola	endoplasmic reticulum, extracellular	77.72	68.72
CDX92652	Canola	endoplasmic reticulum, extracellular	77.72	68.72
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	74.37	66.09
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	71.87	62.02
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	69.08	56.49
Solyc06g083580.2.1	Tomato	nucleus	67.13	55.53
Solyc09g091430.2.1	Tomato	nucleus	69.64	55.43
Solyc11g008140.1.1	Tomato	plasma membrane	61.0	48.78
Solyc06g071020.2.1	Tomato	extracellular	53.2	43.91
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	52.65	43.05
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	52.09	42.99
Solyc09g008380.2.1	Tomato	nucleus	57.38	42.65
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	59.61	42.46
Solyc03g058890.2.1	Tomato	extracellular	52.92	42.32
Solyc05g055510.2.1	Tomato	plasma membrane	58.22	42.31
Solyc02g087670.2.1	Tomato	extracellular	52.37	42.15
Solyc03g058910.2.1	Tomato	extracellular, golgi	45.4	40.95
Solyc05g007080.2.1	Tomato	extracellular	50.7	39.91
Solyc02g067450.2.1	Tomato	extracellular	46.24	26.95
Solyc02g080910.2.1	Tomato	extracellular	52.92	25.03

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:50.4.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:K4C8Q6
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF64	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g071840.1	EnsemblPlants:Solyc06g071840.1.1
TMHMM:TMhelix	UniParc:UPI000276556C	SEG:seg	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4C8Q6]

Coordinates

chr6:+:44255013..44258480

Molecular Weight (calculated)

39507.8 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.257

Length

359 amino acids

Sequence
(BLAST)

001: MATSSISLIF LLSFLLLIPS LLASSPLQNH QYVVDQVDRS INVSRRNLGY LSCGTGNPID DCWRCDPNWE KNRQRLANCA IGFGKNAIGG RDGKIYVVTN
101: SGNDDPVNPK PGTLRYGVIQ DEPLWIIFAS DMVIQLKEEL IMNSFKTIDG RGANVHIAGG PCITIQYVSN VIIHGIHIHD CKQGGNAMVR STPQHYGWRT
201: ISDGDVMLLG HSDSHVQDKN MQVTIAFNHF GEGLVQRIPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRFLASD IRFSKEVTKH ENAPESEWKN
301: WNWRSDGDLM LNGAFFVKSG AGASSNYAKA SSLSAKSSSL ISSLVSGAGA LSCWKGSRC

Best Arabidopsis Sequence Match ( AT1G67750.1 )
(BLAST)

001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC

Arabidopsis Description

Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.