Factsheet for PGSC0003DMT400069632

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 7
plasma membrane 6
golgi 5
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071840.1.1	Tomato	vacuole	85.43	96.38
PGSC0003DMT400039385	Potato	extracellular	86.67	87.1
KRH03893	Soybean	nucleus	83.7	83.5
KRH57176	Soybean	nucleus	82.96	82.76
CDY08948	Canola	endoplasmic reticulum, extracellular	80.74	80.54
CDY24847	Canola	endoplasmic reticulum, extracellular	80.74	80.54
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	80.99	80.39
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	80.49	80.3
CDY03419	Canola	endoplasmic reticulum, extracellular	80.49	80.3
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	80.49	80.3
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	80.74	80.15
CDY34310	Canola	endoplasmic reticulum, vacuole	80.25	80.05
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	80.0	79.41
CDX92652	Canola	endoplasmic reticulum, extracellular	79.51	79.31
CDY11033	Canola	endoplasmic reticulum, extracellular	79.51	79.31
PGSC0003DMT400027955	Potato	extracellular	77.04	77.81
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	74.32	74.69
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	74.32	72.36
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	70.37	64.92
PGSC0003DMT400076251	Potato	extracellular	68.89	62.28
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	68.64	60.43
PGSC0003DMT400042395	Potato	extracellular	53.33	56.69
PGSC0003DMT400011046	Potato	mitochondrion	38.77	53.95
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	52.35	53.4
PGSC0003DMT400009869	Potato	cytosol	55.8	53.05
PGSC0003DMT400083135	Potato	extracellular	55.56	51.72
PGSC0003DMT400079776	Potato	plasma membrane	61.98	51.22
PGSC0003DMT400002241	Potato	extracellular	54.57	50.34
PGSC0003DMT400017863	Potato	extracellular	54.81	50.23
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	53.58	49.89
PGSC0003DMT400003310	Potato	extracellular	53.83	48.88
PGSC0003DMT400014086	Potato	extracellular	53.83	48.77
PGSC0003DMT400014085	Potato	extracellular, golgi	46.91	47.74
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	46.67	47.61
PGSC0003DMT400045436	Potato	extracellular	51.11	45.1
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	60.0	42.56

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102582513	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
UniProt:M1CKT3	PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG400027070	PGSC:PGSC0003DMG400027070	EnsemblPlants:PGSC0003DMT400069632	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF64	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00029509D0	RefSeq:XP_006347419.1	SEG:seg	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400027070]

Coordinates

chr6:+:52640974..52644472

Molecular Weight (calculated)

44498.8 Da

IEP (calculated)

7.770

GRAVY (calculated)

-0.218

Length

405 amino acids

Sequence
(BLAST)

001: MATSSLSLIF LLSSLLLIPS LLASSPLQNH QYVVDQVHRS INVSRRNLGY LSCETGNPID DCWRCDPNWE KNRQRLANCA IGFGKNAVGG RDGKIYVVTN
101: SGNDDPVNPK PGTLRYGVIQ DEPLWIIFAR DMVIQLKEEL IMNSFKTIDG RGATVHIAGG PCITIQYVTN VIIHGIHIHD CKQGGNAMVR STPHHYGWRT
201: ISDGDGVSIF GGSHIWIDHC SLSNCVDGLI DAIMGSTAIT ISNNYMTKHD KVMLLGHSDS HVQDKNMQVT IAFNHFGEGL VQRIPRCRHG YFHVVNNDYT
301: HWEMYAIGGS ANPTINSQGN RFLASDIRFS KEVTKHEISP ESEWKNWNWR SDGDLMLNGA FFVKSGAGAS SNYAKASSLS AKSSSLISSL VSGAGALSCR
401: EGSRC

Best Arabidopsis Sequence Match ( AT4G24780.1 )
(BLAST)

001: MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC

Arabidopsis Description

Probable pectate lyase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M8]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.