Factsheet for PGSC0003DMT400042396

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 7
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042395	Potato	extracellular	62.72	65.35
AT4G22090.1	Thale cress	extracellular	64.48	64.97
CDX82902	Canola	endoplasmic reticulum, extracellular, vacuole	53.4	64.83
AT4G22080.1	Thale cress	extracellular	63.98	64.47
Bra013585.1-P	Field mustard	extracellular	63.22	63.87
CDX79122	Canola	extracellular	63.73	63.09
AT1G11920.1	Thale cress	endoplasmic reticulum, extracellular	60.96	63.02
Bra020859.1-P	Field mustard	extracellular	62.22	62.53
Bra019730.1-P	Field mustard	extracellular	59.7	61.56
CDX98091	Canola	extracellular	57.43	61.46
CDY27438	Canola	extracellular	62.97	61.27
CDY30040	Canola	extracellular	54.91	61.24
CDX98092	Canola	extracellular	54.66	60.96
CDX76388	Canola	extracellular	62.47	60.78
CDY30041	Canola	extracellular	56.68	60.65
Bra019729.1-P	Field mustard	extracellular	56.42	60.54
AT1G30350.1	Thale cress	extracellular	53.65	57.88
PGSC0003DMT400027955	Potato	extracellular	54.66	54.11
PGSC0003DMT400039385	Potato	extracellular	54.16	53.35
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	53.9	53.1
Bra012756.1-P	Field mustard	extracellular	51.39	52.44
PGSC0003DMT400069632	Potato	vacuole	53.4	52.35
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	51.89	46.92
PGSC0003DMT400076251	Potato	extracellular	51.13	45.31
PGSC0003DMT400014085	Potato	extracellular, golgi	44.33	44.22
PGSC0003DMT400009869	Potato	cytosol	46.85	43.66
PGSC0003DMT400003310	Potato	extracellular	48.87	43.5
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	50.13	43.26
PGSC0003DMT400011046	Potato	mitochondrion	31.49	42.96
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	42.57	42.57
PGSC0003DMT400002241	Potato	extracellular	46.85	42.37
PGSC0003DMT400083135	Potato	extracellular	45.84	41.84
PGSC0003DMT400014086	Potato	extracellular	46.6	41.39
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	45.09	41.15
PGSC0003DMT400079776	Potato	plasma membrane	50.63	41.02
PGSC0003DMT400045436	Potato	extracellular	46.35	40.09
PGSC0003DMT400017863	Potato	extracellular	44.33	39.82
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	48.87	33.98

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:M1BCY9
PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG400016440	PGSC:PGSC0003DMG400016440	EnsemblPlants:PGSC0003DMT400042396	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF18	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002950B8A	:	:	:	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400016440]

Coordinates

chr2:-:36620997..36622445

Molecular Weight (calculated)

44281.4 Da

IEP (calculated)

7.323

GRAVY (calculated)

-0.321

Length

397 amino acids

Sequence
(BLAST)

001: MAKSTNSLQI LSWLLIICSF FTIVASKSSD EEETKSISYD PQPHKNGLLN VIDSCWRWKG DWSSNRKALA DCAIGFGSST IGGKYGDIYI VTDSSDDPIN
101: PKPGTLRYGA IQSEPLWIIF RRDMVLTLKN ELMVNSYKTI DGRGAKVEIS NGPCITLDYV TNVIIHGISI HDCKPGKKGM VRSSPEHVGE RLGSDGDAIS
201: VFTSSNVWID HCYLARATDG LLDVIHASTA VTISNNYFTE HDKVMLLGHN DEYTADRKMK VTVVYNHFGR ELVQRMPRVR HGYAHVANNY YDQWLMYAIG
301: GSADPTIFSE GNYFIAPDKA YNKEVTKRET EDKGWKSWKW RSSNDMFMNG AYFLPSGYGS IAPKYTRGQS FIVAHGAFTP SLTSNAGPLQ CVVNEPC

Best Arabidopsis Sequence Match ( AT4G22090.1 )
(BLAST)

001: MTHFTVSCLL VALFLCQSLV HAAYNGYYGY SPAAAPYPAE EPQNIMNPVD SCWRLKSDWD VNREDLADCA VGFGSSTLGG KKGNIYVVTN PYDNAQNPHP
101: GSLRYGVIQA KPLWITFAKD MVITLANELM VNSYKTIDGR GAKVEIAYGP CITIQDVTNV IVHGISIHDC KPGKSGKVRS SPTHVGHRKG SDGDAITIFG
201: SSNVWIDHCY LASCTDGLID VIHASTAITI SNNYFTQHDK VMLLGHNDNF VKDVKMKVTV AFNHFGPGLV ERMPRVRRGY AHVANNRYDK WIMYAIGGSA
301: DPTIFSEGNY FIASDKSYSK EVTKREVKGG WNNWRWRTSN DVFKNGAFFV PSGYGSIPLP YSSAQRFTVA PGNLVPSLTA DAGPLNCNRN GPCY

Arabidopsis Description

Putative pectate lyase 17 [Source:UniProtKB/Swiss-Prot;Acc:O65457]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.