Factsheet for Bra019729.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98092	Canola	extracellular	95.14	98.88
Bra019730.1-P	Field mustard	extracellular	74.59	71.69
Bra013585.1-P	Field mustard	extracellular	63.51	59.8
Bra020859.1-P	Field mustard	extracellular	62.16	58.23
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	60.54	56.42
Bra012756.1-P	Field mustard	extracellular	58.65	55.78
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	55.68	50.74
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	55.68	50.74
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	55.41	50.49
Bra004073.1-P	Field mustard	extracellular	54.59	49.63
Bra033980.1-P	Field mustard	extracellular	54.05	49.26
Bra039081.1-P	Field mustard	extracellular, plastid	54.59	49.03
Bra020672.1-P	Field mustard	extracellular	54.59	48.44
Bra025274.1-P	Field mustard	extracellular	53.78	48.3
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	53.78	48.18
Bra035852.1-P	Field mustard	extracellular	53.24	48.05
Bra033008.1-P	Field mustard	extracellular	51.35	47.74
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	51.89	47.41
Bra036155.1-P	Field mustard	extracellular	53.51	47.37
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	53.24	47.36
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	53.51	46.81
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	51.35	46.0
Bra035588.1-P	Field mustard	extracellular	47.84	45.62
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	52.97	45.48
Bra015341.1-P	Field mustard	extracellular	52.16	44.78
Bra015000.1-P	Field mustard	golgi, plasma membrane	53.78	44.52
Bra032494.1-P	Field mustard	extracellular	51.62	44.32
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	53.78	44.12
Bra026832.1-P	Field mustard	extracellular	49.73	40.71
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	52.97	39.92
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	52.97	39.84
Bra006976.1-P	Field mustard	cytosol	48.65	39.39
Bra026221.1-P	Field mustard	endoplasmic reticulum	48.65	39.3
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	48.11	38.86
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	49.73	38.74
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	50.81	38.37
Bra017412.1-P	Field mustard	extracellular	47.57	38.34
Bra023504.1-P	Field mustard	extracellular	49.73	38.25
Bra028549.1-P	Field mustard	plasma membrane	50.54	38.16
Bra024811.1-P	Field mustard	extracellular	47.3	38.13
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	47.84	37.58
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	50.54	37.47
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	46.22	37.42
Bra005799.1-P	Field mustard	extracellular, golgi	51.35	37.11
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	51.08	36.07

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra019729	EnsemblPlants:Bra019729.1
EnsemblPlants:Bra019729.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4DT86	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF18	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI000253ED7C	SEG:seg	:	:	:

Description

AT1G11920 (E=6e-148) | pectate lyase family protein

Coordinates

chrA06:+:4754472..4755878

Molecular Weight (calculated)

40728.1 Da

IEP (calculated)

6.569

GRAVY (calculated)

-0.209

Length

370 amino acids

Sequence
(BLAST)

001: MASFFLIVSL LFALFFSPLV ESQNPIDSCW RTNPNWESNR PDLAGCAVGF GKYASGGKDG SIYVVTSSED DPENPIPGTL RHAVIQTEPL WITFERDMGI
101: VLKNELIMNS NKTIDGRGAK VEIAHGPCIT IQHVSHVIIH GISIHHCKPG KSGLVRSTPT HIGRRGGSDG DAISVFNSSN VWIDHCYFSQ SEDGLIDVVL
201: GSTAVTISNS YFTQHDKVML LGNHDNIVVD ENMKVTIAFN HFGPGLIERI PRVRRGFAHV ANNRYNKWLK YALGGSADPT IFSEGNYFLA PDDPSKKQVT
301: KRLESGNDRS WKWISSKDVF LNGAYFEPSI NGKVTQVYEG EEEFPVYDGS LVPNLTSAAG PLSCYSGRIC

Best Arabidopsis Sequence Match ( AT1G11920.1 )
(BLAST)

001: MASLFLTIIS LLFAAFSSSV VEAAYSNGYT IPKLLPNPID SCWRRNPYWA SNRRALADCA VGFGKSAVGG KYGSIYVVTN PSDDPENPRP GTLRYAVIQS
101: KPLWITFARD MVIVLRNELI MNSYKTIDGR GAKVEIAYGP CITIQHVSHV IIHGISIHDC KPGKSGRVRS SPTHVGSRKG SDGDAIAIFD SSHIWIDHCF
201: FSRCQDGLID VLHASTAVTI SNNYFTQHDK VMLLGHNDNN VEDKIMRVTI AFNHFGPGLI ERMPRVRRGY AHVANNRYEK WQMYAIGGSA DPTIFSEGNY
301: FVASDDPSKK QVTKRIDSGY DWKRWKWRTS KDVFKNGAYF VPSGYGTVTP LYGRAERFPV SHGSLVPLLT SSAGPLHCYS GRIC

Arabidopsis Description

Putative pectate lyase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65388]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.