Factsheet for Bra007116.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	95.71	95.33
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	85.1	84.93
AT3G54920.1	Thale cress	extracellular	83.27	81.44
Solyc11g008140.1.1	Tomato	plasma membrane	59.18	64.59
HORVU5Hr1G005000.2	Barley	cytosol	44.69	64.22
PGSC0003DMT400079776	Potato	plasma membrane	63.06	63.06
VIT_13s0019g04910.t01	Wine grape	extracellular	62.24	61.49
KRG90767	Soybean	extracellular	61.43	59.96
PGSC0003DMT400011046	Potato	mitochondrion	35.1	59.11
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	48.57	58.62
Bra004073.1-P	Field mustard	extracellular	48.57	58.48
KRH35994	Soybean	extracellular	59.8	58.13
Bra036155.1-P	Field mustard	extracellular	49.59	58.13
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	48.16	58.13
Bra006976.1-P	Field mustard	cytosol	53.67	57.55
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	47.55	57.39
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	58.98	57.34
Bra035852.1-P	Field mustard	extracellular	47.96	57.32
Bra005799.1-P	Field mustard	extracellular, golgi	59.8	57.23
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	48.16	57.14
Bra033980.1-P	Field mustard	extracellular	47.35	57.14
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	48.16	57.14
Bra020672.1-P	Field mustard	extracellular	48.57	57.07
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	48.57	56.26
Solyc05g055510.2.1	Tomato	plasma membrane	56.53	56.07
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	46.12	55.8
Bra015341.1-P	Field mustard	extracellular	48.98	55.68
Bra032494.1-P	Field mustard	extracellular	48.98	55.68
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	59.18	55.34
Bra028549.1-P	Field mustard	plasma membrane	54.9	54.9
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	48.16	54.76
Bra025274.1-P	Field mustard	extracellular	45.92	54.61
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	49.8	54.1
Bra039081.1-P	Field mustard	extracellular, plastid	45.31	53.88
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	45.1	53.12
Bra033008.1-P	Field mustard	extracellular	42.45	52.26
Bra019729.1-P	Field mustard	extracellular	38.37	50.81
Bra019730.1-P	Field mustard	extracellular	39.59	50.39
Bra035588.1-P	Field mustard	extracellular	39.18	49.48
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	57.35	49.21
Bra013585.1-P	Field mustard	extracellular	38.98	48.6
Bra015000.1-P	Field mustard	golgi, plasma membrane	44.29	48.55
Bra020859.1-P	Field mustard	extracellular	38.57	47.85
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	47.76	47.56
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	42.04	44.98
Bra026832.1-P	Field mustard	extracellular	41.22	44.69
Bra017412.1-P	Field mustard	extracellular	41.43	44.23
Bra026221.1-P	Field mustard	endoplasmic reticulum	41.02	43.89
Bra024811.1-P	Field mustard	extracellular	40.61	43.36
Bra012756.1-P	Field mustard	extracellular	34.08	42.93
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	40.0	42.89
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	41.02	42.32
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	40.2	41.83
Bra023504.1-P	Field mustard	extracellular	40.0	40.75
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	40.82	40.08

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra007116	EnsemblPlants:Bra007116.1
EnsemblPlants:Bra007116.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4CSC4	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00025429A5	SEG:seg	:	:

Description

AT5G04310 (E=6e-152) | pectate lyase family protein

Coordinates

chrA09:+:27410134..27413477

Molecular Weight (calculated)

52137.7 Da

IEP (calculated)

7.224

GRAVY (calculated)

-0.334

Length

490 amino acids

Sequence
(BLAST)

001: MLLPHFSTTI FLLCLFFFFT LLQATNLTLT LPHQHPSPDS VALHVLSSIN ASLSRRQLSS SSSSTCRTGN PIDDCWRCTS SDWSSNRQRL ADCSIGFGRG
101: TLGGKNGKIY VVTDSSDNNP SNPTPGTLRY AVIQEEPLWI VFSSNMLIRL RHELIINSYK TIDGRGSAVH ITGNGCLTVQ YVQHVIIHNV HIYDCKPSGG
201: AVVAATPTKS GRRGRSDGDG ISIFGAQKIW IDHCSMSHCT DGLIDAVMGS TAITISNNYF AHHDEVMLLG HDDSYGPDTG MQVTIAFNHF GQGLVQRMPR
301: CRRGYIHVVN NDFTSWKMYA IGGSGNPTIN SQGNRYIAPS DPSAKEVTKR VDSKDDGEWS NWNWRTEGDL MENGAFFVAS GGGVSALYSK ASSVEPKASA
401: LVDQLTRNAG VFGGPRDDQG QSGDSYSGYG GGGGGGGSGG GGGGSSGSDG GTSAIGGTTR GSSTSSSDDS NFFGMIFGSN APPRPLRKDN

Best Arabidopsis Sequence Match ( AT3G54920.1 )
(BLAST)

001: MLLQNFSNTI FLLCLFFTLL SATKPLNLTL PHQHPSPDSV ALHVIRSVNE SLARRQLSSP SSSSSSSSSS SSSSCRTGNP IDDCWRCSDA DWSTNRQRLA
101: DCSIGFGHGT LGGKNGKIYV VTDSSDNNPT NPTPGTLRYG VIQEEPLWIV FSSNMLIRLK QELIINSYKT LDGRGSAVHI TGNGCLTLQY VQHIIIHNLH
201: IYDCKPSAGF EKRGRSDGDG ISIFGSQKIW VDHCSMSHCT DGLIDAVMGS TAITISNNYF THHDEVMLLG HDDNYAPDTG MQVTIAFNHF GQGLVQRMPR
301: CRRGYIHVVN NDFTEWKMYA IGGSGNPTIN SQGNRYSAPS DPSAKEVTKR VDSKDDGEWS NWNWRTEGDL MENGAFFVAS GEGMSSMYSK ASSVDPKAAS
401: LVDQLTRNAG VFGGPRDDQG QSGNSYSPYG GDGGGGGSSG GSSGGGMDVM GGTTRGSSSS SGDDSNVFQM IFGSDAPSRP RLTLLFSLLM ISVLSLSTLL
501: L

Arabidopsis Description

PMR6Probable pectate lyase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z04]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.