Factsheet for AT3G54920.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 7
plastid 1
vacuole 5
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	84.83	86.38
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	81.44	83.27
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	81.04	82.69
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	80.84	82.48
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	80.64	82.11
CDX73426	Canola	endoplasmic reticulum, extracellular, vacuole	83.63	81.04
Solyc11g008140.1.1	Tomato	plasma membrane	58.08	64.81
PGSC0003DMT400079776	Potato	plasma membrane	62.48	63.88
HORVU5Hr1G005000.2	Barley	cytosol	42.91	63.05
VIT_13s0019g04910.t01	Wine grape	extracellular	60.48	61.09
KRG90767	Soybean	extracellular	60.88	60.76
KRH35994	Soybean	extracellular	59.08	58.73
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	58.08	57.74
PGSC0003DMT400011046	Potato	mitochondrion	33.53	57.73
AT3G53190.1	Thale cress	extracellular	55.49	57.56
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	46.71	57.35
Solyc05g055510.2.1	Tomato	plasma membrane	56.49	57.29
AT1G67750.1	Thale cress	endoplasmic reticulum, vacuole	46.51	57.11
AT5G04310.1	Thale cress	plasma membrane	58.48	56.56
AT5G48900.1	Thale cress	extracellular	45.91	55.16
AT5G63180.1	Thale cress	plastid	47.51	55.09
AT3G07010.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	45.31	54.57
AT1G04680.1	Thale cress	extracellular	46.91	54.52
AT3G27400.2	Thale cress	endoplasmic reticulum, vacuole	45.11	54.33
AT4G13210.2	Thale cress	endoplasmic reticulum, extracellular	47.11	53.88
AT3G24670.1	Thale cress	endoplasmic reticulum, extracellular	45.91	52.27
AT5G55720.1	Thale cress	endoplasmic reticulum, extracellular	40.12	51.28
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	47.9	51.06
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	45.71	50.66
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	57.09	50.09
AT1G30350.1	Thale cress	extracellular	36.73	50.0
AT1G11920.1	Thale cress	endoplasmic reticulum, extracellular	38.32	50.0
AT4G22090.1	Thale cress	extracellular	38.12	48.48
AT4G22080.1	Thale cress	extracellular	37.52	47.72
AT1G14420.1	Thale cress	endoplasmic reticulum	40.32	44.01
AT2G02720.1	Thale cress	extracellular, vacuole	39.52	43.52
AT3G01270.1	Thale cress	endoplasmic reticulum, extracellular	40.32	42.53
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	38.72	41.1

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	EntrezGene:824657	UniProt:A0A178VCI0	ProteinID:AEE79313.1
EMBL:AF534079	ArrayExpress:AT3G54920	EnsemblPlantsGene:AT3G54920	RefSeq:AT3G54920	TAIR:AT3G54920	RefSeq:AT3G54920-TAIR-G
EnsemblPlants:AT3G54920.1	TAIR:AT3G54920.1	EMBL:AY058870	EMBL:AY074331	EMBL:AY096739	InterPro:AmbAllergen
ProteinID:CAB41092.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005975	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009605	GO:GO:0009607	GO:GO:0009814	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016049	GO:GO:0016829	GO:GO:0030570	GO:GO:0031225	GO:GO:0040007	GO:GO:0042547
GO:GO:0045490	GO:GO:0046658	GO:GO:0046872	InterPro:IPR012334	RefSeq:NP_191052.2	ProteinID:OAP02582.1
PFAM:PF00544	Symbol:PMR6	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	UniProt:Q93Z04	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0000039F95
SEG:seg	:	:	:	:	:

Description

PMR6Probable pectate lyase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z04]

Coordinates

chr3:+:20344785..20348659

Molecular Weight (calculated)

53932.0 Da

IEP (calculated)

6.448

GRAVY (calculated)

-0.333

Length

501 amino acids

Sequence
(BLAST)

001: MLLQNFSNTI FLLCLFFTLL SATKPLNLTL PHQHPSPDSV ALHVIRSVNE SLARRQLSSP SSSSSSSSSS SSSSCRTGNP IDDCWRCSDA DWSTNRQRLA
101: DCSIGFGHGT LGGKNGKIYV VTDSSDNNPT NPTPGTLRYG VIQEEPLWIV FSSNMLIRLK QELIINSYKT LDGRGSAVHI TGNGCLTLQY VQHIIIHNLH
201: IYDCKPSAGF EKRGRSDGDG ISIFGSQKIW VDHCSMSHCT DGLIDAVMGS TAITISNNYF THHDEVMLLG HDDNYAPDTG MQVTIAFNHF GQGLVQRMPR
301: CRRGYIHVVN NDFTEWKMYA IGGSGNPTIN SQGNRYSAPS DPSAKEVTKR VDSKDDGEWS NWNWRTEGDL MENGAFFVAS GEGMSSMYSK ASSVDPKAAS
401: LVDQLTRNAG VFGGPRDDQG QSGNSYSPYG GDGGGGGSSG GSSGGGMDVM GGTTRGSSSS SGDDSNVFQM IFGSDAPSRP RLTLLFSLLM ISVLSLSTLL
501: L

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.