Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89799 | Canola | extracellular | 94.66 | 94.66 |
| Bra015341.1-P | Field mustard | extracellular | 94.43 | 94.43 |
| Bra030583.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 94.2 | 94.2 |
| CDY15517 | Canola | endoplasmic reticulum, extracellular, golgi | 94.2 | 94.2 |
| CDX86615 | Canola | endoplasmic reticulum, extracellular, golgi | 93.97 | 93.97 |
| CDY61137 | Canola | extracellular | 93.74 | 93.74 |
| Bra032494.1-P | Field mustard | extracellular | 93.04 | 93.04 |
| HORVU2Hr1G002930.1 | Barley | cytosol | 51.74 | 81.39 |
| VIT_05s0051g00590.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 80.51 | 80.7 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, vacuole | 65.66 | 78.61 |
| GSMUA_Achr8P12860_001 | Banana | cytosol | 64.27 | 78.47 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 75.64 | 78.37 |
| KRH33474 | Soybean | nucleus | 80.97 | 77.56 |
| KRG90246 | Soybean | nucleus | 80.28 | 77.23 |
| GSMUA_Achr5P15620_001 | Banana | cytosol | 62.41 | 76.64 |
| GSMUA_Achr11P... | Banana | extracellular | 64.5 | 76.37 |
| AT5G48900.1 | Thale cress | extracellular | 73.78 | 76.26 |
| GSMUA_Achr4P26690_001 | Banana | extracellular | 64.5 | 75.75 |
| Solyc09g091430.2.1 | Tomato | nucleus | 78.89 | 75.39 |
| PGSC0003DMT400076251 | Potato | extracellular | 78.19 | 75.22 |
| GSMUA_Achr3P00290_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 67.98 | 71.29 |
| GSMUA_Achr7P04580_001 | Banana | endoplasmic reticulum, extracellular | 73.09 | 70.47 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 71.46 | 70.32 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 71.69 | 70.23 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 76.33 | 70.0 |
| Zm00001d004448_P001 | Maize | endoplasmic reticulum | 72.62 | 69.87 |
| Zm00001d025067_P001 | Maize | mitochondrion | 72.62 | 68.94 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 64.97 | 68.63 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, golgi | 71.46 | 67.84 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 63.81 | 67.4 |
| TraesCS2D01G018000.1 | Wheat | golgi | 72.39 | 65.96 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 68.68 | 65.49 |
| KXG25802 | Sorghum | plastid | 73.09 | 65.08 |
| TraesCS2A01G016500.1 | Wheat | golgi | 72.62 | 65.07 |
| TraesCS2B01G024500.2 | Wheat | golgi | 72.16 | 64.66 |
| AT5G63180.1 | Thale cress | plastid | 64.27 | 64.12 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 61.25 | 63.46 |
| HORVU2Hr1G002880.2 | Barley | mitochondrion | 71.0 | 60.0 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 50.35 | 55.36 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 48.96 | 54.95 |
| AT1G30350.1 | Thale cress | extracellular | 44.32 | 51.9 |
| AT3G53190.1 | Thale cress | extracellular | 58.0 | 51.76 |
| AT4G22080.1 | Thale cress | extracellular | 46.64 | 51.02 |
| AT4G22090.1 | Thale cress | extracellular | 46.17 | 50.51 |
| AT3G54920.1 | Thale cress | extracellular | 54.52 | 46.91 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 51.51 | 46.74 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 50.81 | 46.4 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 48.96 | 45.97 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 48.03 | 45.49 |
| AT5G04310.1 | Thale cress | plasma membrane | 53.6 | 44.59 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:839452 | UniProt:A0A178W464 | ProteinID:AAB69760.1 |
| ProteinID:AAB80622.1 | ProteinID:AEE27732.1 | ArrayExpress:AT1G04680 | EnsemblPlantsGene:AT1G04680 | RefSeq:AT1G04680 | TAIR:AT1G04680 |
| RefSeq:AT1G04680-TAIR-G | EnsemblPlants:AT1G04680.1 | TAIR:AT1G04680.1 | EMBL:AY054200 | EMBL:AY065034 | EMBL:AY066033 |
| EMBL:AY087724 | InterPro:AmbAllergen | Unigene:At.10458 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 |
| RefSeq:NP_563715.1 | ProteinID:OAP13048.1 | PFAM:PF00544 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00807 | PANTHER:PTHR31683 |
| PANTHER:PTHR31683:SF63 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q940Q1 | SMART:SM00656 |
| SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI00000A4CCD | SEG:seg | : | : |
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178W464]
Coordinates
chr1:-:1303467..1307973
Molecular Weight (calculated)
47773.4 Da
IEP (calculated)
7.965
GRAVY (calculated)
-0.368
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLPTWLLA MMCLLFFVGA MENTTHDNIS SLPRSDETEW NQHAVTNPDE VADEVLALTE MSVRNHTERR KLGYFTCGTG NPIDDCWRCD PNWHKNRKRL
101: ADCGIGFGRN AIGGRDGRFY VVTDPRDDNP VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIVHGL
201: HIHDCKPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW IDHNSLSHCA DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYMRDKA MQVTIAYNHF
301: GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA
401: SSLSAKSSSL VGHITSDAGA LPCRRGRQCS S
101: ADCGIGFGRN AIGGRDGRFY VVTDPRDDNP VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIVHGL
201: HIHDCKPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW IDHNSLSHCA DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYMRDKA MQVTIAYNHF
301: GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA
401: SSLSAKSSSL VGHITSDAGA LPCRRGRQCS S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.