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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:
  • endoplasmic reticulum 6
  • golgi 5
  • extracellular 5
  • vacuole 5
  • plasma membrane 4
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY18330 Canola cytosol 34.07 95.21
CDY56520 Canola extracellular 93.87 94.1
Bra004073.1-P Field mustard extracellular 93.87 94.1
CDY12666 Canola extracellular 93.63 94.09
Bra033980.1-P Field mustard extracellular 93.38 93.84
CDY32557 Canola extracellular 93.38 93.84
CDY28857 Canola extracellular 92.65 92.87
CDY56220 Canola endoplasmic reticulum, extracellular, vacuole 91.42 91.87
Bra004254.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 91.42 91.87
CDY01846 Canola endoplasmic reticulum, extracellular, vacuole 90.69 91.13
CDY70583 Canola cytosol 51.47 86.42
KRH31375 Soybean nucleus 80.39 81.59
KRG97506 Soybean endoplasmic reticulum, golgi 80.15 80.74
AT4G24780.1 Thale cress endoplasmic reticulum, extracellular 77.94 77.94
AT5G63180.1 Thale cress plastid 76.72 72.45
AT3G27400.2 Thale cress endoplasmic reticulum, vacuole 71.32 69.95
AT3G07010.1 Thale cress endoplasmic reticulum, extracellular, vacuole 69.85 68.51
AT5G48900.1 Thale cress extracellular 69.12 67.63
AT3G24670.1 Thale cress endoplasmic reticulum, extracellular 69.61 64.55
AT4G13210.2 Thale cress endoplasmic reticulum, extracellular 68.87 64.16
AT1G04680.1 Thale cress extracellular 67.4 63.81
AT4G13710.1 Thale cress endoplasmic reticulum, extracellular, vacuole 70.1 60.85
AT3G24230.1 Thale cress endoplasmic reticulum, golgi, vacuole 65.2 58.85
AT5G55720.1 Thale cress endoplasmic reticulum, extracellular 53.92 56.12
AT1G11920.1 Thale cress endoplasmic reticulum, extracellular 52.45 55.73
AT1G30350.1 Thale cress extracellular 47.79 52.99
AT4G22090.1 Thale cress extracellular 49.75 51.52
AT4G22080.1 Thale cress extracellular 49.02 50.76
AT3G53190.1 Thale cress extracellular 59.56 50.31
AT3G54920.1 Thale cress extracellular 57.11 46.51
AT5G04310.1 Thale cress plasma membrane 58.33 45.95
AT1G14420.1 Thale cress endoplasmic reticulum 51.23 45.53
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 52.45 45.34
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 52.7 45.26
AT2G02720.1 Thale cress extracellular, vacuole 50.25 45.05
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2EntrezGene:843100ProteinID:AAG28907.1ProteinID:AEE34690.1
EMBL:AF462797ArrayExpress:AT1G67750EnsemblPlantsGene:AT1G67750RefSeq:AT1G67750TAIR:AT1G67750RefSeq:AT1G67750-TAIR-G
EnsemblPlants:AT1G67750.1TAIR:AT1G67750.1EMBL:AY088778EMBL:AY101535InterPro:AmbAllergenUnigene:At.20989
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009987GO:GO:0016829GO:GO:0030570GO:GO:0045490GO:GO:0046872
InterPro:IPR012334RefSeq:NP_564906.1PFAM:PF00544PO:PO:0000013PO:PO:0000037PO:PO:0000084
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PRINTS:PR00807PFscan:PS51257PANTHER:PTHR31683PANTHER:PTHR31683:SF28
InterPro:Pec_lyaseInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceUniProt:Q9FXD8SMART:SM00656SUPFAM:SSF51126
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000009CD6BSEG:seg::
Description
Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
Coordinates
chr1:+:25401514..25403595
Molecular Weight (calculated)
44888.4 Da
IEP (calculated)
8.655
GRAVY (calculated)
-0.236
Length
408 amino acids
Sequence
(BLAST)
001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.