Factsheet for AT3G53190.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 7
vacuole 4
plasma membrane 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006976.1-P	Field mustard	cytosol	85.51	90.37
Bra028549.1-P	Field mustard	plasma membrane	91.51	90.2
CDX67560	Canola	plasma membrane	91.3	90.0
CDX78152	Canola	extracellular	88.61	89.92
CDX73573	Canola	extracellular	87.99	89.29
CDY13312	Canola	plasma membrane	90.06	81.16
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	71.01	72.98
PGSC0003DMT400009869	Potato	cytosol	61.9	70.19
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	68.12	68.97
VIT_08s0007g04820.t01	Wine grape	plastid	69.36	68.51
Solyc09g008380.2.1	Tomato	nucleus	67.08	67.08
AT1G67750.1	Thale cress	endoplasmic reticulum, vacuole	50.31	59.56
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	50.1	59.31
AT3G07010.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	50.52	58.65
AT5G48900.1	Thale cress	extracellular	50.52	58.51
AT1G04680.1	Thale cress	extracellular	51.76	58.0
AT5G63180.1	Thale cress	plastid	51.55	57.64
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	56.73	57.56
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	56.73	57.32
TraesCS1A01G143600.1	Wheat	extracellular	56.94	57.29
GSMUA_Achr4P25120_001	Banana	extracellular	52.38	56.6
AT4G13210.2	Thale cress	endoplasmic reticulum, extracellular	50.72	55.94
AT3G24670.1	Thale cress	endoplasmic reticulum, extracellular	50.93	55.91
KXG38421	Sorghum	extracellular	55.69	55.81
Zm00001d032806_P001	Maize	cytosol, plastid	49.9	55.79
AT3G54920.1	Thale cress	extracellular	57.56	55.49
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	55.28	54.83
Os10t0457200-01	Rice	plasma membrane	55.49	54.58
AT3G27400.2	Thale cress	endoplasmic reticulum, vacuole	46.58	54.09
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	51.76	53.19
AT5G04310.1	Thale cress	plasma membrane	56.73	52.9
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	48.86	52.21
AT5G55720.1	Thale cress	endoplasmic reticulum, extracellular	42.03	51.79
AT1G11920.1	Thale cress	endoplasmic reticulum, extracellular	39.96	50.26
GSMUA_Achr1P03320_001	Banana	plasma membrane	51.97	49.12
AT4G22080.1	Thale cress	extracellular	38.72	47.46
AT4G22090.1	Thale cress	extracellular	38.51	47.21
AT1G30350.1	Thale cress	extracellular	35.2	46.2
AT1G14420.1	Thale cress	endoplasmic reticulum	43.48	45.75
AT2G02720.1	Thale cress	extracellular, vacuole	40.17	42.64
AT3G01270.1	Thale cress	endoplasmic reticulum, extracellular	40.99	41.68
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	40.37	41.31

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	EntrezGene:824485	ProteinID:AEE79046.1	EMBL:AK221575
ArrayExpress:AT3G53190	EnsemblPlantsGene:AT3G53190	RefSeq:AT3G53190	TAIR:AT3G53190	RefSeq:AT3G53190-TAIR-G	EnsemblPlants:AT3G53190.1
TAIR:AT3G53190.1	EMBL:AY084835	InterPro:AmbAllergen	ProteinID:CAB64222.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016829	GO:GO:0030570	GO:GO:0031225
GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	RefSeq:NP_566979.1	PFAM:PF00544	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF21	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	UniProt:Q56XU8	UniProt:Q9SCP2
SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000016370A	SEG:seg

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]

Coordinates

chr3:+:19713799..19717740

Molecular Weight (calculated)

53596.5 Da

IEP (calculated)

6.448

GRAVY (calculated)

-0.219

Length

483 amino acids

Sequence
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.