Factsheet for GSMUA_Achr4P25120_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03320_001	Banana	plasma membrane	82.1	71.82
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	64.88	60.92
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	65.1	60.88
TraesCS1A01G143600.1	Wheat	extracellular	65.32	60.83
Os10t0457200-01	Rice	plasma membrane	66.44	60.49
KXG38421	Sorghum	extracellular	65.1	60.37
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	48.55	60.28
GSMUA_Achr5P15620_001	Banana	cytosol	46.98	59.83
GSMUA_Achr8P12860_001	Banana	cytosol	46.09	58.36
GSMUA_Achr11P...	Banana	extracellular	47.2	57.97
GSMUA_Achr4P26690_001	Banana	extracellular	47.43	57.77
Zm00001d032806_P001	Maize	cytosol, plastid	55.03	56.94
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	61.52	56.47
PGSC0003DMT400009869	Potato	cytosol	53.69	56.34
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	57.94	55.11
Bra006976.1-P	Field mustard	cytosol	55.7	54.49
VIT_08s0007g04820.t01	Wine grape	plastid	59.51	54.4
Solyc09g008380.2.1	Tomato	nucleus	57.94	53.62
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	48.99	53.28
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	48.32	53.07
CDX73573	Canola	extracellular	56.38	52.94
CDX78152	Canola	extracellular	56.38	52.94
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	56.15	52.62
AT3G53190.1	Thale cress	extracellular	56.6	52.38
CDX67560	Canola	plasma membrane	55.48	50.61
Bra028549.1-P	Field mustard	plasma membrane	55.48	50.61
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	50.34	50.34
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	49.89	49.12
GSMUA_Achr10P...	Banana	cytosol	36.24	46.82
CDY13312	Canola	plasma membrane	54.59	45.52
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	41.39	42.24
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	40.27	41.19
GSMUA_Achr10P...	Banana	extracellular	33.11	37.95
GSMUA_Achr7P08840_001	Banana	nucleus	38.93	25.97

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr4G25120_001	EnsemblPlants:GSMUA_Achr4P25120_001	EnsemblPlants:GSMUA_Achr4T25120_001	InterPro:IPR012334	UniProt:M0SRX3
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000294B75A
SEG:seg	:	:	:	:	:

Description

Probable pectate lyase 12 [Source:GMGC_GENE;Acc:GSMUA_Achr4G25120_001]

Coordinates

chr4:+:24726617..24731245

Molecular Weight (calculated)

48241.8 Da

IEP (calculated)

6.919

GRAVY (calculated)

-0.168

Length

447 amino acids

Sequence
(BLAST)

001: MLLHHRHRLP AHILLFLLSF PLLTAASPFP NSSLHLDAHR DPDSVAREVQ RQVEFSHRRA LLAAGAKDQC VTGNPVDDCW RCSGSDWRQD RQRLADCGIG
101: FGRDALGGKG GPIYELLVNS FKTIDGRGAV VHIAGGACIT LQYVSNIIIH NVHVHHCVPA GEANVRSSPT HYGWRTRSDG DGISIYSGRK IWVDHCALSY
201: CADGLIDAVM GSTGITISNN HFSHHNEVML LGHSDDYLPD SGMQVTIAFN RFGEELVQRM PRCRRGYFHV VNNDFTAWQM YAIGGSANPT INSQGNRYIA
301: PTNPGAKEAS QSKVDTEESD WSGWNWRTEG DVMVNGAFFV ASGQGLEAKY AKAWSVEPKS AALIDQLTGN AGVLGGPRDN SVGPGNSGVN YVGSATTQDG
401: GEGGYGSLGM VFASVAPPPS APPIFSSVSI FLSFYLIVAA LFSLCRP

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.