Factsheet for PGSC0003DMT400009869

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008380.2.1	Tomato	nucleus	97.42	85.92
Bra006976.1-P	Field mustard	cytosol	68.54	63.9
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	69.48	62.98
VIT_08s0007g04820.t01	Wine grape	plastid	71.6	62.37
AT3G53190.1	Thale cress	extracellular	70.19	61.9
CDX73573	Canola	extracellular	68.54	61.34
CDX78152	Canola	extracellular	68.31	61.13
CDX67560	Canola	plasma membrane	69.72	60.61
Bra028549.1-P	Field mustard	plasma membrane	69.48	60.41
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	66.43	59.33
PGSC0003DMT400027955	Potato	extracellular	52.82	56.11
PGSC0003DMT400069632	Potato	vacuole	53.05	55.8
PGSC0003DMT400079776	Potato	plasma membrane	63.85	55.51
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	61.5	55.04
Zm00001d032806_P001	Maize	cytosol, plastid	55.63	54.86
TraesCS1A01G143600.1	Wheat	extracellular	61.74	54.79
PGSC0003DMT400011046	Potato	mitochondrion	37.32	54.64
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	61.03	54.39
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	51.41	54.34
CDY13312	Canola	plasma membrane	68.31	54.29
PGSC0003DMT400039385	Potato	extracellular	51.17	54.09
KXG38421	Sorghum	extracellular	61.03	53.94
GSMUA_Achr4P25120_001	Banana	extracellular	56.34	53.69
Os10t0457200-01	Rice	plasma membrane	61.03	52.95
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	53.76	52.16
PGSC0003DMT400076251	Potato	extracellular	54.69	52.01
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	59.15	51.75
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	54.46	50.43
PGSC0003DMT400042395	Potato	extracellular	42.72	47.77
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	43.66	46.85
PGSC0003DMT400014086	Potato	extracellular	48.83	46.53
PGSC0003DMT400017863	Potato	extracellular	47.89	46.15
GSMUA_Achr1P03320_001	Banana	plasma membrane	54.93	45.79
PGSC0003DMT400083135	Potato	extracellular	46.48	45.52
PGSC0003DMT400014085	Potato	extracellular, golgi	42.49	45.48
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	45.77	44.83
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	41.55	44.58
PGSC0003DMT400003310	Potato	extracellular	46.48	44.39
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	59.39	44.31
PGSC0003DMT400002241	Potato	extracellular	45.54	44.19
PGSC0003DMT400045436	Potato	extracellular	44.84	41.61

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:M0ZX26
PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG400003871	PGSC:PGSC0003DMG400003871	EnsemblPlants:PGSC0003DMT400009869	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF21	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
UniParc:UPI000295F900	SEG:seg	:	:	:	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400003871]

Coordinates

chr9:-:4914082..4917121

Molecular Weight (calculated)

47184.8 Da

IEP (calculated)

5.120

GRAVY (calculated)

-0.432

Length

426 amino acids

Sequence
(BLAST)

001: MLSYTSSDQS SCQTGNPIDD CWRCDHSWQL NRQRLADCAI GFGQYALGGK GGRYYVVTSS SDPDPVNPPP GTLRYGVIQE EPLWIVFSAN MEIKLSEELI
101: FNSHKTLDGR GVNVHITGGG CITLQYISNV IIHNIHVHHC YESGYTNVRS SPTHFGYRGK SDGDGISIFG SRDIWIDHCS LSNCKDGLID VVMGSTGITI
201: SNNHFSHHNE VMLLGHSDDY LPDSGMQVTI SFNHFGKKLI QRMPRCRRGY IHVVNNDFTR WEMYAIGGSG NPTINSQGNR YIAPFDPFAK EVTKRVDTDE
301: GKWRNWNWRS EGDVMANGAY FVASGEEVEV KYEKAYSVEP KSADFIDQIT LNAGVLIHRG SNSGKWTAAT NNDTESAGDD GGGEDLVAIS GDSDDDYGGD
401: EESRSSTIYS NFSLLFNFLM TLLALL

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.