Factsheet for PGSC0003DMT400051938

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083580.2.1	Tomato	nucleus	92.39	97.93
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	78.26	82.0
PGSC0003DMT400076251	Potato	extracellular	72.61	74.55
PGSC0003DMT400039385	Potato	extracellular	62.17	70.97
PGSC0003DMT400069632	Potato	vacuole	60.43	68.64
PGSC0003DMT400027955	Potato	extracellular	59.78	68.58
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	58.48	66.75
PGSC0003DMT400009869	Potato	cytosol	50.43	54.46
PGSC0003DMT400011046	Potato	mitochondrion	34.13	53.95
PGSC0003DMT400042395	Potato	extracellular	43.48	52.49
PGSC0003DMT400083135	Potato	extracellular	47.61	50.34
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	43.26	50.13
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	47.39	50.11
PGSC0003DMT400002241	Potato	extracellular	47.83	50.11
PGSC0003DMT400014086	Potato	extracellular	48.26	49.66
PGSC0003DMT400079776	Potato	plasma membrane	52.39	49.18
PGSC0003DMT400017863	Potato	extracellular	46.96	48.87
PGSC0003DMT400003310	Potato	extracellular	47.17	48.65
PGSC0003DMT400014085	Potato	extracellular, golgi	41.52	47.99
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	41.3	47.86
PGSC0003DMT400045436	Potato	extracellular	45.0	45.1
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	52.17	42.03

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102603970	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
UniProt:M1BSH4	PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG400020156	PGSC:PGSC0003DMG400020156	EnsemblPlants:PGSC0003DMT400051938	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF62	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000294F4F3	SEG:seg	:

Description

Pectase lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400020156]

Coordinates

chr6:+:58482105..58488006

Molecular Weight (calculated)

51165.6 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.153

Length

460 amino acids

Sequence
(BLAST)

001: MAAALRLSCL CFLQLLIVIV LFINSSADNS SPFLSTLFGA TFTLFYSLDF EFFIVSIEEA EQFQSLSNST MANRLSGNDE LRHEHAVDDP EAIASMVDMS
101: IRNSTERRKL GYFSCTTGNP IDDCWRCDRN WQRNRRRLAD CSIGFGRNAI GGRDGRFYVV TDSGDDDPVN PRPGTLRHAV IQDEPLWIVF KRDMHITLKQ
201: ELIMNSFKTI DARGVNVHIA NGACITIQFV TNIIIHGLHI HDCKPTGNAM VRSSPSHYGW RTMADGDAIS IFGSSHIWVD HNSLSNCADG LIDAIMGSTA
301: ITISNNYFTH HNEVILLGHS DSYVRDKVMQ VTIAFNHFGE GLIQRMPRCR HGYFHVVNND YTHWEMYAIG GSAAPTINSQ GNRYLAPVNP FAKEVTKRVE
401: PWEGSWKQWN WRSVGDLLLN GAYFTASGRA APGSYARASS LAAKSSSMVG MITSNAGALS

Best Arabidopsis Sequence Match ( AT3G07010.1 )
(BLAST)

001: MAVTKLILFA SALLLTALFI GVNASRSNET WHEHAVENPD EVAAMVDMSI RNSTERRRLG YFSCATGNPI DDCWRCDRKW QLRRKRLADC SIGFGRNAIG
101: GRDGRFYVVT DPGDDDPVNP IPGTLRHAVI QDEPLWIIFK RDMVITLKQE LIMNSFKTID GRGVNVHIAN GACLTIQYVT NIIVHGIHVH DCKPTGNAMV
201: RSSPSHYGFR SMADGDAISI FGSSHIWIDH NSLSNCADGL VDAVMSSTAI TVSNNFFTHH NEVMLLGHSD SYTRDKVMQV TIAYNHFGEG LIQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SAGPTINSQG NRFLAPVNPF AKEVTKREYT GESKWKHWNW RSEGDLFLNG AFFTRSGAGA GANYARASSL SAKSSSLVGT
401: MTSYSGALNC RAGRRC

Arabidopsis Description

Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.