Factsheet for PGSC0003DMT400011046

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 4
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	92.44	53.37
HORVU5Hr1G005000.2	Barley	cytosol	58.42	49.85
PGSC0003DMT400079776	Potato	plasma membrane	70.1	41.63
KRG90767	Soybean	extracellular	70.45	40.84
KRH35994	Soybean	extracellular	69.42	40.08
PGSC0003DMT400039385	Potato	extracellular	55.33	39.95
VIT_13s0019g04910.t01	Wine grape	extracellular	67.01	39.31
CDX70244	Canola	vacuole	58.76	38.78
PGSC0003DMT400069632	Potato	vacuole	53.95	38.77
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	53.61	38.71
PGSC0003DMT400027955	Potato	extracellular	51.89	37.66
PGSC0003DMT400009869	Potato	cytosol	54.64	37.32
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	61.51	36.38
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	61.17	36.25
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	60.82	36.05
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	54.3	35.99
AT5G04310.1	Thale cress	plasma membrane	63.57	35.71
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	59.11	35.1
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	68.38	34.85
PGSC0003DMT400076251	Potato	extracellular	53.61	34.82
CDY11284	Canola	extracellular, golgi	60.82	34.71
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	58.42	34.55
Bra005799.1-P	Field mustard	extracellular, golgi	60.14	34.18
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	61.51	34.16
CDY41382	Canola	endoplasmic reticulum, golgi	61.86	34.16
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	53.95	34.13
CDY58428	Canola	endoplasmic reticulum, golgi, plastid	60.14	33.98
AT3G54920.1	Thale cress	extracellular	57.73	33.53
PGSC0003DMT400042395	Potato	extracellular	43.3	33.07
CDX73426	Canola	endoplasmic reticulum, extracellular, vacuole	58.42	32.88
PGSC0003DMT400083135	Potato	extracellular	48.8	32.64
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	47.77	31.95
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	42.96	31.49
PGSC0003DMT400002241	Potato	extracellular	47.08	31.21
PGSC0003DMT400014086	Potato	extracellular	46.39	30.2
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	40.89	29.97
PGSC0003DMT400017863	Potato	extracellular	45.36	29.86
PGSC0003DMT400014085	Potato	extracellular, golgi	40.55	29.65
PGSC0003DMT400003310	Potato	extracellular	45.02	29.37
PGSC0003DMT400045436	Potato	extracellular	45.36	28.76

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:M0ZYZ4
PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG400004325	PGSC:PGSC0003DMG400004325	EnsemblPlants:PGSC0003DMT400011046	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
TMHMM:TMhelix	UniParc:UPI00029548C5	SEG:seg	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004325]

Coordinates

chr10:-:18678326..18679281

Molecular Weight (calculated)

32437.7 Da

IEP (calculated)

7.213

GRAVY (calculated)

-0.185

Length

291 amino acids

Sequence
(BLAST)

001: MSSQSLFYRA RMKLRMPPAT AILLFIYLIV SFSHLVNAQL NLTLPNQHPY PESVVHQLQR KVNESRLLLQ TTVRDNKCQS TGNPIDDCWQ CDPNWAKDRQ
101: RLADCSIGFG QGAMGGKGGQ IYVVRDSSDR DTVNPTPGTL RHAVVQEEPL WIVFAADMVI KLKHELIINN YKTIDGRGAN VHITGNGCIT LQYVSNVIIH
201: NVHIYNCVPS GNTNIRSSPT HVGWRGKSDG DGISIFGSHN IWIDHCALSH CTDGLIDAIM GSTAITISNN YFSHHDDVML LGHDDYLTNF L

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.