Factsheet for Bra005799.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 3
nucleus 1
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11284	Canola	extracellular, golgi	98.05	98.43
AT5G04310.1	Thale cress	plasma membrane	89.06	88.03
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	88.09	86.07
HORVU5Hr1G005000.2	Barley	cytosol	42.77	64.22
VIT_13s0019g04910.t01	Wine grape	extracellular	62.11	64.11
Solyc11g008140.1.1	Tomato	plasma membrane	56.05	63.92
KRG90767	Soybean	extracellular	61.52	62.75
KRH35994	Soybean	extracellular	60.74	61.71
PGSC0003DMT400079776	Potato	plasma membrane	58.98	61.63
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	58.59	61.1
PGSC0003DMT400011046	Potato	mitochondrion	34.18	60.14
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	57.23	59.8
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	46.48	58.62
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	57.42	58.33
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	46.09	58.13
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	46.09	58.13
Solyc05g055510.2.1	Tomato	plasma membrane	56.05	58.1
Bra004073.1-P	Field mustard	extracellular	45.9	57.74
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	46.09	57.14
Bra033980.1-P	Field mustard	extracellular	45.12	56.9
Bra035852.1-P	Field mustard	extracellular	45.31	56.59
Bra036155.1-P	Field mustard	extracellular	46.09	56.46
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	45.31	56.17
Bra006976.1-P	Field mustard	cytosol	49.8	55.8
Bra020672.1-P	Field mustard	extracellular	45.12	55.4
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	45.7	55.32
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	43.55	55.06
Bra025274.1-P	Field mustard	extracellular	43.75	54.37
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	45.7	54.29
Bra039081.1-P	Field mustard	extracellular, plastid	43.55	54.13
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	43.75	53.85
Bra028549.1-P	Field mustard	plasma membrane	51.17	53.47
Bra032494.1-P	Field mustard	extracellular	44.92	53.36
Bra015341.1-P	Field mustard	extracellular	44.53	52.9
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	46.29	52.55
Bra033008.1-P	Field mustard	extracellular	40.23	51.76
Bra019729.1-P	Field mustard	extracellular	37.11	51.35
Bra015000.1-P	Field mustard	golgi, plasma membrane	44.73	51.23
Bra035588.1-P	Field mustard	extracellular	38.67	51.03
Bra019730.1-P	Field mustard	extracellular	37.89	50.39
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	56.05	50.26
Bra013585.1-P	Field mustard	extracellular	37.7	49.11
Bra020859.1-P	Field mustard	extracellular	37.11	48.1
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	45.9	47.76
Bra012756.1-P	Field mustard	extracellular	33.59	44.22
Bra026832.1-P	Field mustard	extracellular	37.89	42.92
Bra026221.1-P	Field mustard	endoplasmic reticulum	37.7	42.14
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	37.3	41.7
Bra017412.1-P	Field mustard	extracellular	37.3	41.61
Bra024811.1-P	Field mustard	extracellular	37.11	41.39
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	37.7	40.63
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	36.91	40.13
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	35.74	40.04
Bra023504.1-P	Field mustard	extracellular	37.3	39.71
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	38.09	39.08

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra005799	EnsemblPlants:Bra005799.1
EnsemblPlants:Bra005799.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4CNL1	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
UniParc:UPI000253FB9B	SEG:seg	:	:	:	:

Description

AT5G04310 (E=6e-237) | pectate lyase family protein

Coordinates

chrA03:-:702269..706285

Molecular Weight (calculated)

55659.7 Da

IEP (calculated)

7.314

GRAVY (calculated)

-0.234

Length

512 amino acids

Sequence
(BLAST)

001: MVAHKRVHNP LRPTCICIIW FCLLVSLPYH GRASSFNLSL PHQHPFPEHV VLNVQRKLND SLSRRNLLTY QQDDATTASS APIPSCLTGN PIDDCWRCDP
101: NWSQNRQRLA DCSIGFGQGT LGGKGGRFYL VTDSSDNDAA NPLPGTLRHA VIQPEPLWII FSGDMGITLR HELIVGSFKT IDGRGTNVQI TGHGCLTIQQ
201: VSHVIIHNVH IHHCKPSGNT LVASSPMHVG FRGVSDGDGI SVLASHHIWV DHCSLGYCSD GLIDVILAST AVTVSNNYFH HHDEVMLLGH DDRYTADSGM
301: QVTIAFNHFG EGLVQRMPRG RHGYIHEVNN DFTAWEMYAI GGSANPTINS QGNRYTAPID PNAKEVTKRV DSNEKHWGKW NWRTEGDVMV NGAFFVPSGD
401: GVSPAYARAT SLQAKTADVI DQLTVNAGVF GDPSGRNGQG GGFPGITGGG GTVTRGYSKG GPGGGSSDSD DGIFTMIFGS NSSAAAVALR PRQVWSIVFT
501: IILLWYFPHH RR

Best Arabidopsis Sequence Match ( AT5G04310.2 )
(BLAST)

001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPSG RNGQGGSFPG ITNGGGTITR GYSKSGPAGG GSGSDSDDGL FTLIFGNNSG AVALRPGQVW
501: SILLIIILYW YIPHHTRS

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.