Factsheet for Bra033008.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
vacuole 5
extracellular 7
endoplasmic reticulum 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34149	Canola	extracellular	85.68	94.99
Bra025274.1-P	Field mustard	extracellular	92.71	89.56
AT3G27400.2	Thale cress	endoplasmic reticulum, vacuole	91.46	87.5
Bra039081.1-P	Field mustard	extracellular, plastid	89.95	86.89
KRH58231	Soybean	extracellular	73.87	72.77
KRG93976	Soybean	extracellular	73.87	72.77
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	73.62	72.7
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	73.37	72.28
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	72.86	71.96
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	71.11	69.7
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	70.85	69.46
Bra004073.1-P	Field mustard	extracellular	70.1	68.55
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	69.6	68.23
Bra033980.1-P	Field mustard	extracellular	68.59	67.24
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	68.59	66.1
Bra035852.1-P	Field mustard	extracellular	68.09	66.1
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	65.08	62.26
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	61.31	60.25
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	61.81	59.56
Bra020672.1-P	Field mustard	extracellular	62.31	59.47
Bra036155.1-P	Field mustard	extracellular	62.06	59.09
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	62.56	58.87
Bra015341.1-P	Field mustard	extracellular	62.81	58.0
Bra032494.1-P	Field mustard	extracellular	62.31	57.54
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	61.81	57.08
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	62.31	54.99
Bra015000.1-P	Field mustard	golgi, plasma membrane	58.04	51.68
Bra019729.1-P	Field mustard	extracellular	47.74	51.35
Bra019730.1-P	Field mustard	extracellular	48.99	50.65
Bra035588.1-P	Field mustard	extracellular	48.49	49.74
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	60.55	48.98
Bra013585.1-P	Field mustard	extracellular	46.73	47.33
Bra020859.1-P	Field mustard	extracellular	45.98	46.33
Bra006976.1-P	Field mustard	cytosol	52.76	45.95
Bra012756.1-P	Field mustard	extracellular	43.97	44.99
Bra028549.1-P	Field mustard	plasma membrane	53.77	43.67
Bra026832.1-P	Field mustard	extracellular	49.5	43.58
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	50.75	42.89
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	51.01	42.74
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	48.74	42.45
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	52.26	42.45
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	48.74	42.36
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	51.76	41.96
Bra026221.1-P	Field mustard	endoplasmic reticulum	48.24	41.92
Bra017412.1-P	Field mustard	extracellular	48.24	41.83
Bra024811.1-P	Field mustard	extracellular	47.99	41.61
Bra023504.1-P	Field mustard	extracellular	50.0	41.37
Bra005799.1-P	Field mustard	extracellular, golgi	51.76	40.23
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	50.25	40.08
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	51.01	38.74

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra033008	EnsemblPlants:Bra033008.1
EnsemblPlants:Bra033008.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4EW25	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF29	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI00025455DF	SEG:seg	:	:	:

Description

AT3G27400 (E=1e-154) | pectate lyase family protein

Coordinates

chrA02:-:21941795..21944445

Molecular Weight (calculated)

44374.3 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.404

Length

398 amino acids

Sequence
(BLAST)

001: MISYSNNPFV YTLIFLLSIG NTIAFSSSSS PHTQDPNLVV DEVNRSVFNA SRRSLAYLSC RTGNPIDDCW RCDPNWETNR QRLADCAIGF GKHAIGGRGG
101: RIYVVTDPAN DDPVSPRQGT LRHAVTQEEP LWIIFKRDMV IRLKKELIIT SFKTIDGRGS SVHITDGPCI KIHYATNIII HGINIHDCKP GSAGMIRDGP
201: RHTGWWIKSD GDAVAIFGGK HVWIDHCSFS NCDDGLIDAI HGSTAITISN NHMTHHDKVM LLGHHDSYTQ DKNMQVTIAC RHGYFHVVNN DYTHWEMYAI
301: GGSASPTIFS QGNRFLAPNT RFNKEVTKHE DAPESKWRHW NWRSEGDILL NGAYFRQSGA RSSSTYARAS SLSARPSSLV GSITTTAGTL SCRRGRRC

Best Arabidopsis Sequence Match ( AT3G27400.1 )
(BLAST)

001: MVSYSNNHFA YAFLLLLTIG NTLAFSSSLP DHVQDPNLVV DDVNRSVFNA SRRSLAYLSC RTGNPIDDCW RCDPNWETNR QRLADCAIGF GKNAIGGRKG
101: RIYVVTDPAN DDPVNPRPGT LRYAVTQEEP LWIIFKRDMV IRLKKELIIT SFKTIDGRGS SVHITDGPCL KIHYATNIII HGINIHDCKP GSGGMIKDGP
201: HHTGWWMQSD GDAVAIFGGK HVWIDHCSLS NCDDGLIDAI HGSTAITISN NHMTHHDKVM LLGHSDSYTQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH
301: VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APNTRFNKEV TKHEDAPESK WRDWNWRSEG DMLLNGAYFR ESGAEAPSTY ARASSLSARP SSLVGSITTT
401: AGTLSCRRGR RC

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNU6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.