Factsheet for Bra012756.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G30350.1	Thale cress	extracellular	60.67	64.13
Bra019729.1-P	Field mustard	extracellular	55.78	58.65
Bra019730.1-P	Field mustard	extracellular	57.33	57.92
Bra020859.1-P	Field mustard	extracellular	56.04	55.19
Bra013585.1-P	Field mustard	extracellular	55.27	54.71
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	52.44	51.39
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	48.84	46.8
Bra033980.1-P	Field mustard	extracellular	48.33	46.31
Bra004073.1-P	Field mustard	extracellular	48.07	45.95
Bra035588.1-P	Field mustard	extracellular	45.76	45.88
Bra039081.1-P	Field mustard	extracellular, plastid	47.81	45.15
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	47.04	45.07
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	47.04	45.07
Bra025274.1-P	Field mustard	extracellular	46.79	44.17
Bra033008.1-P	Field mustard	extracellular	44.99	43.97
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	46.53	43.83
Bra020672.1-P	Field mustard	extracellular	46.79	43.65
Bra035852.1-P	Field mustard	extracellular	45.76	43.41
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	45.76	43.1
Bra036155.1-P	Field mustard	extracellular	45.76	42.58
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	44.22	42.47
Bra015341.1-P	Field mustard	extracellular	46.27	41.76
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	46.27	41.76
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	45.24	41.61
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	44.47	41.59
Bra032494.1-P	Field mustard	extracellular	45.5	41.07
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	46.02	39.69
Bra015000.1-P	Field mustard	golgi, plasma membrane	43.96	38.26
Bra026832.1-P	Field mustard	extracellular	43.44	37.39
Bra026221.1-P	Field mustard	endoplasmic reticulum	42.93	36.46
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	46.02	36.38
Bra006976.1-P	Field mustard	cytosol	41.65	35.45
Bra017412.1-P	Field mustard	extracellular	41.65	35.29
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	41.39	35.23
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	40.87	34.72
Bra024811.1-P	Field mustard	extracellular	40.87	34.64
Bra023504.1-P	Field mustard	extracellular	42.67	34.51
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	44.22	34.47
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	43.44	34.42
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	41.9	34.32
Bra028549.1-P	Field mustard	plasma membrane	43.19	34.29
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	41.39	34.18
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	42.93	34.08
Bra005799.1-P	Field mustard	extracellular, golgi	44.22	33.59
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	44.47	33.02

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra012756	EnsemblPlants:Bra012756.1
EnsemblPlants:Bra012756.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4D8E6	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF18	InterPro:PbH1	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002540846	SEG:seg	:

Description

AT1G30350 (E=8e-127) | pectate lyase family protein

Coordinates

chrA03:+:22402780..22404312

Molecular Weight (calculated)

42118.2 Da

IEP (calculated)

9.982

GRAVY (calculated)

-0.235

Length

389 amino acids

Sequence
(BLAST)

001: MASLVLLTFS LLFATFSSPL VDAFNYSNDS TFAAPAPNPI DAFNYSDGNY TLGAALNPID ACWRRDAKWS TNRQALARCA VGFGKGALGG SKGPIYVVTS
101: PADDAGKPKP GTLRFGATQS NPLWITFARD MVIRLRTELE VKSHKTIDGR GVKVDIGNGP CISIKRASNV IIHGITVHDC RLSKGFDGDG IRVFQSRNVW
201: IDHCHLSRCQ DGLIDVVTSS TAVTISNNRL INHQKAMLLG HSDNHMADKN MKVTVAFNVF GPGLTERMPR VRRGYAHVAN NMYNKWNLYA IGGSADPTIF
301: SESNHFVAPD RKEHKEVTKR MDKSPAAKNW KWSTNKDVFI NGAFFTPSGG PGVPPPYAAG ERFPVAPGAQ VPALTASAGP LRCAPGRAC

Best Arabidopsis Sequence Match ( AT1G30350.1 )
(BLAST)

001: MASLVVIVSL LLAAFASPLL ETAHSYNVTA PRVSLNPIDA CWRRNPKWAT NRQALAHCAV GYGKAAIGGK NGPIYVVTNP SDNPTRPSPG TLRYAVSQPK
101: PLWITFARDM VIVLKSQLMI NSYKTIDGRG AKVEIANGPC LRIRQVKHVI IHGISIHDCK ADPNGMDGDG IRVFQSTHVW IDHCFLSRCH DGLIDVIVSS
201: TAVTISNNYF TQHDKVMLLG HDDSYMGDKD MRVTIAFNTF GPGLIERMPR VRRGYAHVAN NRYEKWQMYA IGGSANPIIF SEGNYFVAPE KRSSKQVTKR
301: MMAGPDSKRW KWGTSRDVFM NGAFFGPPGV IVRPLYKGGE GFRVAHGSLV PSLTSSAGPL RCYVGRIC

Arabidopsis Description

Probable pectate lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.