Factsheet for Bra035852.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16732	Canola	endoplasmic reticulum, golgi	99.76	95.56
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	94.39	93.7
AT5G63180.1	Thale cress	plastid	91.46	86.81
VIT_17s0000g09810.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	79.76	81.14
VIT_01s0137g00240.t01	Wine grape	extracellular	79.27	80.65
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	79.76	80.54
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	79.76	80.54
PGSC0003DMT400027955	Potato	extracellular	78.05	79.8
Solyc05g014000.2.1	Tomato	extracellular, nucleus	78.05	79.8
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	78.78	79.36
Bra004073.1-P	Field mustard	extracellular	76.1	76.66
Bra033980.1-P	Field mustard	extracellular	75.61	76.35
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	75.37	76.11
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	73.66	72.6
Bra025274.1-P	Field mustard	extracellular	70.24	69.9
Bra039081.1-P	Field mustard	extracellular, plastid	70.0	69.66
Bra033008.1-P	Field mustard	extracellular	66.1	68.09
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	68.54	68.04
Bra036155.1-P	Field mustard	extracellular	68.78	67.46
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	65.85	66.67
Bra020672.1-P	Field mustard	extracellular	67.8	66.67
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	65.85	63.83
Bra015341.1-P	Field mustard	extracellular	66.83	63.57
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	66.59	63.34
Bra032494.1-P	Field mustard	extracellular	66.1	62.88
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	67.32	61.2
Bra035588.1-P	Field mustard	extracellular	54.15	57.22
Bra015000.1-P	Field mustard	golgi, plasma membrane	62.2	57.05
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	67.32	56.1
Bra019729.1-P	Field mustard	extracellular	48.05	53.24
Bra006976.1-P	Field mustard	cytosol	59.02	52.95
Bra019730.1-P	Field mustard	extracellular	48.29	51.43
Bra028549.1-P	Field mustard	plasma membrane	60.73	50.82
Bra020859.1-P	Field mustard	extracellular	48.29	50.13
Bra013585.1-P	Field mustard	extracellular	47.8	49.87
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	57.32	47.96
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	57.32	47.86
Bra026832.1-P	Field mustard	extracellular	50.98	46.24
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	53.41	46.11
Bra017412.1-P	Field mustard	extracellular	51.46	45.97
Bra012756.1-P	Field mustard	extracellular	43.41	45.76
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	50.98	45.63
Bra005799.1-P	Field mustard	extracellular, golgi	56.59	45.31
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	51.95	45.22
Bra023504.1-P	Field mustard	extracellular	52.68	44.91
Bra024811.1-P	Field mustard	extracellular	50.24	44.88
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	49.76	44.64
Bra026221.1-P	Field mustard	endoplasmic reticulum	49.27	44.1
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	55.85	43.7
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	52.93	43.49

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra035852	EnsemblPlants:Bra035852.1
EnsemblPlants:Bra035852.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4F452	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF28	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002542118	SEG:seg	:	:

Description

AT5G63180 (E=2e-220) | pectate lyase family protein

Coordinates

chrA09:-:3299294..3301494

Molecular Weight (calculated)

45362.3 Da

IEP (calculated)

6.501

GRAVY (calculated)

-0.319

Length

410 amino acids

Sequence
(BLAST)

001: MLVSSHASFT LVFLYCIFFS AVALSLPVSD PELVVEEVHR QINESISRRN LGYFSCETGN PIDDCWRCDK DWEKNRKQLA DCGIGFGKNA IGGRDGEFYV
101: VTDPGNDDPV NPKPGTLRYA VIQDQPLWII FIRDMTIQLK EELIMNSFKT LDGRGASVHI SGGPCITIQY VTNIIIHGLH IHDCKQGGNT YVRDSPEHYG
201: WRTISDGDGV SIFGGSHVWV DHCSLSNCND GLIDAIRGST AITISNNYLT HHNKVMLLGH SDTYVQDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNG PFDKEVTKHE DAPESEWSHW NWRSEGDLML NGAFFTLSGA GPGKSSSYSK ASSLAARPSS HVGEITIASG
401: ALSCKKGSHC

Best Arabidopsis Sequence Match ( AT5G63180.1 )
(BLAST)

001: MFRPNSLLIP SNLSTTKSQR NTMLNSSYLS FALIFFCCIL FSALASSLPV SDPELVVEEV HRKINESISR RKLGFFSCGS GNPIDDCWRC DKDWEKNRKR
101: LADCGIGFGK NAIGGRDGEI YVVTDPGNDD PVNPRPGTLR YAVIQDEPLW IIFKRDMTIQ LKEELIMNSF KTLDGRGASV HISGGPCITI QYVTNIIIHG
201: LHIHDCKQGG NTYVRDSPEH YGYRTVSDGD GVSIFGGSHV WVDHCSLSNC NDGLIDAIRG STAITISNNY LTHHNKVMLL GHSDTYEQDK NMQVTIAFNH
301: FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI NSQGNRFLAP DDSSSKEVTK HEDAPEDEWR NWNWRSEGDL LLNGAFFTYS GAGPAKSSSY
401: SKASSLAARP SSHVGEITIA SGALSCKRGS HC

Arabidopsis Description

Probable pectate lyase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.