Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038614.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 88.43 | 92.49 |
| CDY41506 | Canola | endoplasmic reticulum, extracellular, vacuole | 88.43 | 92.49 |
| Bra035852.1-P | Field mustard | extracellular | 86.81 | 91.46 |
| CDY48132 | Canola | endoplasmic reticulum, golgi | 88.66 | 89.49 |
| CDY16732 | Canola | endoplasmic reticulum, golgi | 88.19 | 89.02 |
| CDY65626 | Canola | golgi | 88.43 | 84.14 |
| VIT_01s0137g00240.t01 | Wine grape | extracellular | 76.39 | 81.89 |
| VIT_17s0000g09810.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 76.16 | 81.64 |
| GSMUA_Achr6P28260_001 | Banana | endoplasmic reticulum, extracellular | 74.54 | 79.12 |
| PGSC0003DMT400027955 | Potato | extracellular | 73.15 | 78.8 |
| Solyc05g014000.2.1 | Tomato | extracellular, nucleus | 73.15 | 78.8 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 74.31 | 78.68 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 72.45 | 76.72 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 66.9 | 69.47 |
| AT5G48900.1 | Thale cress | extracellular | 63.66 | 65.95 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 63.19 | 65.62 |
| AT1G04680.1 | Thale cress | extracellular | 64.12 | 64.27 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 64.12 | 63.24 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 63.19 | 62.05 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 64.58 | 59.36 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 61.57 | 58.85 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 50.69 | 55.87 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 47.69 | 53.65 |
| AT3G53190.1 | Thale cress | extracellular | 57.64 | 51.55 |
| AT4G22090.1 | Thale cress | extracellular | 46.53 | 51.02 |
| AT4G22080.1 | Thale cress | extracellular | 46.3 | 50.76 |
| AT1G30350.1 | Thale cress | extracellular | 43.06 | 50.54 |
| AT3G54920.1 | Thale cress | extracellular | 55.09 | 47.51 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 50.93 | 46.32 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 50.23 | 45.97 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 47.45 | 45.05 |
| AT5G04310.1 | Thale cress | plasma membrane | 53.94 | 44.98 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 46.76 | 44.01 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:836439 | ProteinID:AED97715.1 | ArrayExpress:AT5G63180 |
| EnsemblPlantsGene:AT5G63180 | RefSeq:AT5G63180 | TAIR:AT5G63180 | RefSeq:AT5G63180-TAIR-G | EnsemblPlants:AT5G63180.1 | TAIR:AT5G63180.1 |
| EMBL:AY058197 | InterPro:AmbAllergen | ProteinID:BAB10560.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016829 |
| GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | RefSeq:NP_568967.1 | PFAM:PF00544 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF28 |
| InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q93Z25 | SMART:SM00656 | SUPFAM:SSF51126 |
| TMHMM:TMhelix | UniParc:UPI00000A75B5 | SEG:seg | : | : | : |
Description
Probable pectate lyase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z25]
Coordinates
chr5:-:25340914..25343369
Molecular Weight (calculated)
47897.3 Da
IEP (calculated)
6.882
GRAVY (calculated)
-0.392
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRPNSLLIP SNLSTTKSQR NTMLNSSYLS FALIFFCCIL FSALASSLPV SDPELVVEEV HRKINESISR RKLGFFSCGS GNPIDDCWRC DKDWEKNRKR
101: LADCGIGFGK NAIGGRDGEI YVVTDPGNDD PVNPRPGTLR YAVIQDEPLW IIFKRDMTIQ LKEELIMNSF KTLDGRGASV HISGGPCITI QYVTNIIIHG
201: LHIHDCKQGG NTYVRDSPEH YGYRTVSDGD GVSIFGGSHV WVDHCSLSNC NDGLIDAIRG STAITISNNY LTHHNKVMLL GHSDTYEQDK NMQVTIAFNH
301: FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI NSQGNRFLAP DDSSSKEVTK HEDAPEDEWR NWNWRSEGDL LLNGAFFTYS GAGPAKSSSY
401: SKASSLAARP SSHVGEITIA SGALSCKRGS HC
101: LADCGIGFGK NAIGGRDGEI YVVTDPGNDD PVNPRPGTLR YAVIQDEPLW IIFKRDMTIQ LKEELIMNSF KTLDGRGASV HISGGPCITI QYVTNIIIHG
201: LHIHDCKQGG NTYVRDSPEH YGYRTVSDGD GVSIFGGSHV WVDHCSLSNC NDGLIDAIRG STAITISNNY LTHHNKVMLL GHSDTYEQDK NMQVTIAFNH
301: FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI NSQGNRFLAP DDSSSKEVTK HEDAPEDEWR NWNWRSEGDL LLNGAFFTYS GAGPAKSSSY
401: SKASSLAARP SSHVGEITIA SGALSCKRGS HC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.