Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 7
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026832.1-P | Field mustard | extracellular | 83.44 | 84.73 |
| CDX96854 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 83.88 | 84.06 |
| Bra016700.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 83.66 | 83.84 |
| CDY68729 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 83.22 | 83.41 |
| Bra026221.1-P | Field mustard | endoplasmic reticulum | 83.01 | 83.19 |
| CDY39314 | Canola | extracellular | 82.79 | 82.79 |
| CDX81636 | Canola | endoplasmic reticulum | 82.14 | 77.89 |
| CDY53552 | Canola | extracellular | 83.01 | 76.97 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 72.77 | 73.41 |
| KRH74782 | Soybean | extracellular | 58.39 | 59.82 |
| TraesCS4A01G385700.1 | Wheat | cytosol | 28.54 | 59.82 |
| KRH45851 | Soybean | extracellular | 58.61 | 59.65 |
| VIT_14s0108g00030.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 56.86 | 59.45 |
| VIT_01s0026g01670.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 56.86 | 58.92 |
| KRH69345 | Soybean | extracellular | 57.3 | 58.84 |
| PGSC0003DMT400017863 | Potato | extracellular | 55.34 | 57.47 |
| GSMUA_Achr2P16830_001 | Banana | endoplasmic reticulum, extracellular | 54.47 | 57.08 |
| GSMUA_Achr6P00830_001 | Banana | endoplasmic reticulum, extracellular | 54.03 | 56.75 |
| PGSC0003DMT400003310 | Potato | extracellular | 54.9 | 56.5 |
| GSMUA_Achr10P... | Banana | extracellular | 47.93 | 56.41 |
| Solyc03g058890.2.1 | Tomato | extracellular | 54.9 | 56.12 |
| VIT_01s0026g01680.t01 | Wine grape | endoplasmic reticulum, extracellular | 54.03 | 55.98 |
| Solyc02g087670.2.1 | Tomato | extracellular | 54.25 | 55.83 |
| GSMUA_Achr10P... | Banana | cytosol | 42.05 | 55.78 |
| PGSC0003DMT400014086 | Potato | extracellular | 54.03 | 55.48 |
| Zm00001d000216_P001 | Maize | golgi, vacuole | 52.51 | 55.02 |
| EES06507 | Sorghum | golgi, vacuole | 52.94 | 54.61 |
| OQU75805 | Sorghum | mitochondrion | 51.85 | 53.85 |
| PGSC0003DMT400017862 | Potato | endoplasmic reticulum, extracellular | 46.41 | 53.65 |
| Os02t0214400-01 | Rice | plasma membrane | 52.07 | 53.59 |
| Os06t0144200-01 | Rice | extracellular, plasma membrane | 52.51 | 53.56 |
| Zm00001d046389_P007 | Maize | endoplasmic reticulum, extracellular | 50.33 | 53.35 |
| Os06t0583900-01 | Rice | plasma membrane | 52.07 | 53.35 |
| HORVU6Hr1G038630.1 | Barley | extracellular | 46.84 | 53.09 |
| TraesCS7D01G356700.1 | Wheat | extracellular | 51.2 | 52.93 |
| TraesCS7A01G365700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 50.98 | 52.7 |
| TraesCS7B01G261700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 50.98 | 52.7 |
| EER88571 | Sorghum | endoplasmic reticulum, plasma membrane | 52.07 | 52.64 |
| TraesCS7A01G086600.1 | Wheat | endoplasmic reticulum, extracellular | 51.2 | 52.46 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 54.25 | 52.42 |
| Zm00001d036158_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 51.2 | 51.88 |
| EER87830 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 52.29 | 51.61 |
| HORVU7Hr1G085860.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 49.67 | 51.35 |
| TraesCS6D01G170500.1 | Wheat | golgi | 47.49 | 51.29 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 45.53 | 51.23 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 46.41 | 51.2 |
| PGSC0003DMT400014085 | Potato | extracellular, golgi | 44.23 | 51.01 |
| TraesCS6B01G211900.1 | Wheat | extracellular, golgi, vacuole | 47.06 | 50.82 |
| Solyc03g058910.2.1 | Tomato | extracellular, golgi | 44.01 | 50.75 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 52.07 | 50.64 |
| Os06t0144900-01 | Rice | mitochondrion | 51.85 | 50.32 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 44.44 | 50.0 |
| AT5G48900.1 | Thale cress | extracellular | 45.1 | 49.64 |
| Zm00001d036945_P001 | Maize | endoplasmic reticulum | 44.88 | 49.05 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 44.44 | 49.04 |
| AT1G04680.1 | Thale cress | extracellular | 45.97 | 48.96 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 46.41 | 48.41 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 46.19 | 48.4 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 39.65 | 47.4 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 40.3 | 47.19 |
| AT5G63180.1 | Thale cress | plastid | 44.01 | 46.76 |
| TraesCS6A01G184500.2 | Wheat | extracellular, golgi, vacuole | 47.06 | 46.65 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 45.32 | 46.02 |
| AT4G22080.1 | Thale cress | extracellular | 39.22 | 45.69 |
| AT1G30350.1 | Thale cress | extracellular | 36.6 | 45.65 |
| HORVU7Hr1G019500.1 | Barley | mitochondrion | 51.63 | 45.58 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 46.41 | 45.32 |
| AT4G22090.1 | Thale cress | extracellular | 38.56 | 44.92 |
| AT3G53190.1 | Thale cress | extracellular | 45.75 | 43.48 |
| AT3G54920.1 | Thale cress | extracellular | 44.01 | 40.32 |
| AT5G04310.1 | Thale cress | plasma membrane | 43.36 | 38.42 |
| GSMUA_Achr7P08840_001 | Banana | nucleus | 55.56 | 38.06 |
| Solyc02g067450.2.1 | Tomato | extracellular | 50.76 | 37.82 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:838004 | ProteinID:AAB69759.1 | ProteinID:AAF43942.1 |
| ProteinID:AEE29161.1 | EMBL:AK175801 | EMBL:AK175847 | EMBL:AK175891 | EMBL:AK175980 | EMBL:AK176113 |
| EMBL:AK176136 | ArrayExpress:AT1G14420 | EnsemblPlantsGene:AT1G14420 | RefSeq:AT1G14420 | TAIR:AT1G14420 | RefSeq:AT1G14420-TAIR-G |
| EnsemblPlants:AT1G14420.1 | TAIR:AT1G14420.1 | Symbol:AT59 | InterPro:AmbAllergen | EMBL:BT010451 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009664 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 |
| GO:GO:0046872 | InterPro:IPR012334 | RefSeq:NP_172894.1 | PFAM:PF00544 | PFAM:PF04431 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF14 | InterPro:Pec_lyase | InterPro:Pec_lyase_N |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q680M0 | UniProt:Q9M9S2 | SMART:SM00656 | SUPFAM:SSF51126 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000004824F | : | : | : |
Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
Coordinates
chr1:-:4931485..4933662
Molecular Weight (calculated)
51457.4 Da
IEP (calculated)
9.457
GRAVY (calculated)
-0.388
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.