Factsheet for Os06t0583900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	75.67	78.29
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	76.56	77.25
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	77.68	76.65
TraesCS7B01G261700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	75.89	76.58
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	75.22	75.9
TraesCS7D01G356700.1	Wheat	extracellular	75.22	75.9
Zm00001d036945_P001	Maize	endoplasmic reticulum	69.42	74.05
Os02t0214400-01	Rice	plasma membrane	64.29	64.57
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	59.6	61.1
GSMUA_Achr10P...	Banana	extracellular	52.68	60.51
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	58.93	60.14
GSMUA_Achr10P...	Banana	cytosol	46.21	59.83
VIT_17s0000g05740.t01	Wine grape	extracellular	56.7	59.21
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	58.48	59.14
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	57.81	59.13
KRH01130	Soybean	extracellular	56.7	57.73
KRH63402	Soybean	extracellular	56.03	57.7
Solyc06g071020.2.1	Tomato	extracellular	55.8	57.47
PGSC0003DMT400083135	Potato	extracellular	55.8	57.47
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	55.58	56.21
KRH54508	Soybean	extracellular	41.74	56.16
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	54.46	56.09
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	55.36	55.98
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	54.24	55.86
PGSC0003DMT400002241	Potato	extracellular	54.69	55.81
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	54.69	55.81
KRG93502	Soybean	extracellular	54.69	55.3
PGSC0003DMT400003310	Potato	extracellular	54.91	55.16
Solyc02g087670.2.1	Tomato	extracellular	54.91	55.16
Os06t0144200-01	Rice	extracellular, plasma membrane	55.36	55.11
KRH74782	Soybean	extracellular	54.91	54.91
PGSC0003DMT400017863	Potato	extracellular	54.02	54.75
PGSC0003DMT400014086	Potato	extracellular	54.46	54.59
KRH45851	Soybean	extracellular	54.91	54.55
Solyc03g058890.2.1	Tomato	extracellular	53.35	53.23
KRH69345	Soybean	extracellular	52.23	52.35
CDY04133	Canola	extracellular	53.35	52.07
Bra017412.1-P	Field mustard	extracellular	53.35	52.07
AT1G14420.1	Thale cress	endoplasmic reticulum	53.35	52.07
CDY28691	Canola	endoplasmic reticulum, extracellular, vacuole	54.46	52.03
Bra026832.1-P	Field mustard	extracellular	52.46	51.99
CDY68729	Canola	endoplasmic reticulum, extracellular, plasma membrane	53.12	51.97
CDY17432	Canola	extracellular	53.12	51.85
Os06t0144900-01	Rice	mitochondrion	54.69	51.8
CDX96854	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.9	51.75
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	52.9	51.75
CDX74293	Canola	endoplasmic reticulum, extracellular	54.24	51.59
CDX91953	Canola	endoplasmic reticulum, extracellular	54.24	51.59
Bra026221.1-P	Field mustard	endoplasmic reticulum	52.68	51.53
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	45.54	51.39
PGSC0003DMT400045436	Potato	extracellular	52.23	50.98
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	53.57	50.96
Solyc05g007080.2.1	Tomato	extracellular	51.79	50.88
CDY39314	Canola	extracellular	52.01	50.76
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	52.68	50.0
AT3G01270.1	Thale cress	endoplasmic reticulum, extracellular	52.9	49.89
CDY03043	Canola	extracellular	51.12	49.89
CDX70590	Canola	endoplasmic reticulum, extracellular	52.68	49.68
CDX85564	Canola	extracellular	52.23	49.47
Bra024811.1-P	Field mustard	extracellular	50.67	49.46
CDY45202	Canola	extracellular	50.67	49.46
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	50.45	49.45
CDY63769	Canola	extracellular	52.68	49.27
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	52.23	49.26
CDX78607	Canola	endoplasmic reticulum, extracellular	52.23	49.26
AT2G02720.1	Thale cress	extracellular, vacuole	50.0	49.23
Bra023504.1-P	Field mustard	extracellular	52.46	48.86
Solyc03g058910.2.1	Tomato	extracellular, golgi	43.3	48.74
PGSC0003DMT400014085	Potato	extracellular, golgi	43.3	48.74
CDY66593	Canola	endoplasmic reticulum, extracellular	53.35	47.9
CDX69550	Canola	endoplasmic reticulum, extracellular	53.12	47.7
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	53.12	47.7
CDX81636	Canola	endoplasmic reticulum	51.34	47.52
CDY53552	Canola	extracellular	52.23	47.27
Os05t0293500-01	Rice	extracellular	36.38	43.7
Os10t0457200-01	Rice	plasma membrane	44.64	40.73
GSMUA_Achr7P08840_001	Banana	nucleus	60.04	40.15
Solyc02g067450.2.1	Tomato	extracellular	48.21	35.06
CDY04136	Canola	mitochondrion, nucleus	0.45	1.32

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	EntrezGene:4341389	EMBL:AK072583	InterPro:AmbAllergen
ProteinID:BAD68734.1	ProteinID:BAF19859.1	ProteinID:BAS98381.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829
GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	EMBL:KY038496	EnsemblPlantsGene:Os06g0583900
EnsemblPlants:Os06t0583900-01	PFAM:PF00544	PFAM:PF04431	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF27
InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	UniProt:Q5VP91	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0000457F66	RefSeq:XP_015641991.1	SEG:seg	:

Description

Similar to Pectate lyase homolog (EC 4.2.2.2) (Fragment). (Os06t0583900-01)

Coordinates

chr6:+:22821117..22823386

Molecular Weight (calculated)

50264.8 Da

IEP (calculated)

8.322

GRAVY (calculated)

-0.387

Length

448 amino acids

Sequence
(BLAST)

001: MEVLIRWSKL PAAGSLVLYA VFLLLSAAAT SEANIGEYDE YWQKRKLMAD AAAEATYKRD PFEVTNSFNR AVHRSEEESG RRELAMTKRK KFAGPCKATN
101: PIDRCWRCRA DWVTDRKRLA RCAQGFGRNT TGGLAGKFYL VTDGTDDDVE NPRPGTLRWG VIQDEPLWII FAKDMIINLK EEMMINSDKT IDGRGAQVRI
201: TNGAQVTVQN SNNVIIHNIH IHDILQGKGG MIRDSPEHFG FRTQSDGDGI SIFGSTNVWL DHLSLSNCQD GLIDVIAKST GVTISNCHLT NHNDVMLFGS
301: SDSFSEDQIM QITVAFNHFG RGLVQRMPRC RWGFFHVVNN DYTHWLMYAI GGSKNPTIIS QGNRYIAPPN LAAKRITKQL GATEEEWKNW VWHSEEDLFM
401: EGAYFTTSGG PIQKQFSNKD LIKPKPGSYV TRLTRFAGSI PCVAGKPC

Best Arabidopsis Sequence Match ( AT5G15110.1 )
(BLAST)

001: MEMVRLSKLM FTFCIAVLIP TIRGNISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH ERHYDNSTDV TTPEEDGDAK PEEEEKEFIE MLGSSTNSTR
101: RSLRGKGKGK WSKLKGPCTA SNPIDKCWRC RSDWAKRRKK LTRCVRGFGH RTTGGKRGRI YVVTSNLDED MVNPKPGTLR HAVIQKEPLW IIFKNDMSIR
201: LNQELLINSH KTIDARGANV HVAHGAGITM QFVKNVVIHG LHIHHISESS GGMIRDSVDH FGMRTRADGD GLSIYGSSNI WLDHISMSKC QDGLIDAIVG
301: STGITISNSH FTHHNDVMLL GAQNTNEADK HMQVTVAYNH FGKGLVQRMP RIRWGFVHVV NNDYTHWELY AIGGSQGPTI LSHGNRFIAP PHKPHYREVT
401: KRDYASEDEW KHWNWRSDKD VFMNGAYFRQ SGNPQYKCAH TRQQMIKPKN GLAVSKLTKY AGALDCRVGR RC

Arabidopsis Description

Pectate lyase family protein [Source:TAIR;Acc:AT5G15110]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.