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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • nucleus 2
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 5
  • golgi 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d046389_P007 Maize endoplasmic reticulum, extracellular 84.14 88.22
Zm00001d036945_P001 Maize endoplasmic reticulum 77.09 83.33
Os06t0583900-01 Rice plasma membrane 76.65 77.68
HORVU7Hr1G085860.1 Barley endoplasmic reticulum, extracellular, vacuole 71.15 72.75
TraesCS7A01G365700.1 Wheat endoplasmic reticulum, extracellular, vacuole 70.7 72.3
TraesCS7B01G261700.1 Wheat endoplasmic reticulum, extracellular, vacuole 70.7 72.3
TraesCS7D01G356700.1 Wheat extracellular 70.48 72.07
EES06507 Sorghum golgi, vacuole 64.98 66.29
GSMUA_Achr10P... Banana cytosol 46.04 60.4
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 57.71 59.68
VIT_17s0000g05740.t01 Wine grape extracellular 55.95 59.21
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 56.83 59.04
GSMUA_Achr10P... Banana extracellular 50.44 58.72
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 57.27 58.69
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 56.39 58.45
PGSC0003DMT400083135 Potato extracellular 55.95 58.39
KRH01130 Soybean extracellular 55.95 57.73
Solyc06g071020.2.1 Tomato extracellular 55.07 57.47
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 55.73 57.11
PGSC0003DMT400002241 Potato extracellular 55.07 56.95
KRH63402 Soybean extracellular 54.41 56.78
KRG93502 Soybean extracellular 55.29 56.66
OQU75805 Sorghum mitochondrion 55.07 56.56
Solyc01g010740.2.1 Tomato endoplasmic reticulum, extracellular 54.41 56.26
KRH54508 Soybean extracellular 41.19 56.16
PGSC0003DMT400046723 Potato endoplasmic reticulum, golgi, vacuole 53.74 56.09
Solyc03g113150.2.1 Tomato endoplasmic reticulum, golgi, vacuole 53.74 56.09
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 53.96 55.3
KRH74782 Soybean extracellular 54.19 54.91
KRH45851 Soybean extracellular 53.96 54.32
PGSC0003DMT400003310 Potato extracellular 53.3 54.26
Solyc02g087670.2.1 Tomato extracellular 53.3 54.26
PGSC0003DMT400017863 Potato extracellular 52.64 54.07
PGSC0003DMT400014086 Potato extracellular 53.08 53.91
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 54.19 53.71
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 54.19 53.71
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 54.19 53.71
EER87830 Sorghum endoplasmic reticulum, extracellular, vacuole 54.41 53.12
KRH69345 Soybean extracellular 52.2 53.02
Solyc03g058890.2.1 Tomato extracellular 52.2 52.78
KXG22892 Sorghum cytosol 32.16 52.71
Bra026221.1-P Field mustard endoplasmic reticulum 53.08 52.62
Bra026832.1-P Field mustard extracellular 52.2 52.43
CDY04133 Canola extracellular 52.86 52.29
Bra017412.1-P Field mustard extracellular 52.86 52.29
CDY17432 Canola extracellular 52.86 52.29
PGSC0003DMT400017862 Potato endoplasmic reticulum, extracellular 45.59 52.14
CDY39314 Canola extracellular 52.64 52.07
AT1G14420.1 Thale cress endoplasmic reticulum 52.64 52.07
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 53.52 51.48
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 52.86 51.17
CDX74293 Canola endoplasmic reticulum, extracellular 52.64 50.74
CDX91953 Canola endoplasmic reticulum, extracellular 52.64 50.74
AT2G02720.1 Thale cress extracellular, vacuole 50.66 50.55
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 52.42 50.53
CDX85564 Canola extracellular 52.64 50.53
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 52.86 50.53
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 50.66 50.33
CDX70590 Canola endoplasmic reticulum, extracellular 52.64 50.32
PGSC0003DMT400045436 Potato extracellular 50.66 50.11
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 52.42 50.11
CDX78607 Canola endoplasmic reticulum, extracellular 52.42 50.11
CDY63769 Canola extracellular 52.86 50.1
Solyc05g007080.2.1 Tomato extracellular 50.22 50.0
Bra023504.1-P Field mustard extracellular 52.86 49.9
CDY45202 Canola extracellular 50.22 49.67
Bra024811.1-P Field mustard extracellular 50.22 49.67
CDY03043 Canola extracellular 50.22 49.67
CDY66593 Canola endoplasmic reticulum, extracellular 54.41 49.5
Solyc03g058910.2.1 Tomato extracellular, golgi 43.39 49.5
CDX69550 Canola endoplasmic reticulum, extracellular 54.19 49.3
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 54.19 49.3
PGSC0003DMT400014085 Potato extracellular, golgi 42.73 48.74
CDX81636 Canola endoplasmic reticulum 51.1 47.93
CDY53552 Canola extracellular 51.98 47.68
KXG25802 Sorghum plastid 50.22 47.11
KXG38421 Sorghum extracellular 45.37 42.74
GSMUA_Achr7P08840_001 Banana nucleus 56.61 38.36
Solyc02g067450.2.1 Tomato extracellular 48.46 35.71
CDY04136 Canola mitochondrion, nucleus 0.44 1.32
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2EntrezGene:8065039InterPro:AmbAllergenUniProt:C5Z561
EnsemblPlants:EER88571ProteinID:EER88571ProteinID:EER88571.1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016829
GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334PFAM:PF00544PFAM:PF04431
PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF27InterPro:Pec_lyaseInterPro:Pec_lyase_NInterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulenceSMART:SM00656EnsemblPlantsGene:SORBI_3010G176400SUPFAM:SSF51126unigene:Sbi.405SignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI0001A89311RefSeq:XP_002437204.1SEG:seg::
Description
hypothetical protein
Coordinates
chr10:+:51434306..51436406
Molecular Weight (calculated)
51181.8 Da
IEP (calculated)
8.920
GRAVY (calculated)
-0.446
Length
454 amino acids
Sequence
(BLAST)
001: MEEEGFRWSR AGSFVLFYLV LFLSAAVSSE ANIGDFDDYW RQRKLMADAA AEATYKHDPL EVTNQLNRAV HRSVEKEDMS TRRRAMMGHK KGKLNNGPCE
101: ATNPIDRCWR CRQDWATDRK RLARCAQGFG RNTTGGLAGK FYVVTDGTDD DVVNPRPGTL RWAVIQIEPL WITFARTMII TLKEELIIQG DKTIDGRGAQ
201: VRIANGAQLT VQFANNVIIH NVHINDIMSS NKNGGNIRDS PDHFGWRTVS DGDGITLFGS TNVWLDHLSL SNCQDGLIDV IVKSTGVTIS NCHMTNHNDV
301: MLFSSSDKHP EDQIMQITVA FNHFGRGLVQ RMPRCRWGFF HVVNNDYTHW LMYAIGGSKA PTIISQGNRY IAPPNLAAKL VTKHHDAPES EWKNWVWHSE
401: NDLFMEGANF TVSGGQKINR NFHKKDLIKP KNGSYVTRLT RYAGALACRP GKPC
Best Arabidopsis Sequence Match ( AT5G15110.1 )
(BLAST)
001: MEMVRLSKLM FTFCIAVLIP TIRGNISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH ERHYDNSTDV TTPEEDGDAK PEEEEKEFIE MLGSSTNSTR
101: RSLRGKGKGK WSKLKGPCTA SNPIDKCWRC RSDWAKRRKK LTRCVRGFGH RTTGGKRGRI YVVTSNLDED MVNPKPGTLR HAVIQKEPLW IIFKNDMSIR
201: LNQELLINSH KTIDARGANV HVAHGAGITM QFVKNVVIHG LHIHHISESS GGMIRDSVDH FGMRTRADGD GLSIYGSSNI WLDHISMSKC QDGLIDAIVG
301: STGITISNSH FTHHNDVMLL GAQNTNEADK HMQVTVAYNH FGKGLVQRMP RIRWGFVHVV NNDYTHWELY AIGGSQGPTI LSHGNRFIAP PHKPHYREVT
401: KRDYASEDEW KHWNWRSDKD VFMNGAYFRQ SGNPQYKCAH TRQQMIKPKN GLAVSKLTKY AGALDCRVGR RC
Arabidopsis Description
Pectate lyase family protein [Source:TAIR;Acc:AT5G15110]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.