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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 6
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d000216_P001 Maize golgi, vacuole 87.56 88.36
TraesCS4A01G385700.1 Wheat cytosol 39.59 79.91
Os06t0144200-01 Rice extracellular, plasma membrane 76.92 75.56
TraesCS7A01G086600.1 Wheat endoplasmic reticulum, extracellular 74.21 73.21
EER87830 Sorghum endoplasmic reticulum, extracellular, vacuole 68.1 64.73
HORVU7Hr1G019500.1 Barley mitochondrion 74.66 63.46
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 59.28 59.95
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 58.82 59.36
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 59.05 58.92
GSMUA_Achr10P... Banana extracellular 51.81 58.72
VIT_17s0000g05740.t01 Wine grape extracellular 56.79 58.51
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 57.69 58.09
PGSC0003DMT400046723 Potato endoplasmic reticulum, golgi, vacuole 56.79 57.7
EES06507 Sorghum golgi, vacuole 57.92 57.53
Solyc06g071020.2.1 Tomato extracellular 56.33 57.24
Solyc03g113150.2.1 Tomato endoplasmic reticulum, golgi, vacuole 56.33 57.24
PGSC0003DMT400083135 Potato extracellular 56.11 57.01
GSMUA_Achr10P... Banana cytosol 44.57 56.94
KRH63402 Soybean extracellular 55.2 56.09
EER88571 Sorghum endoplasmic reticulum, plasma membrane 56.56 55.07
PGSC0003DMT400003310 Potato extracellular 55.2 54.71
KRH54508 Soybean extracellular 41.18 54.65
KRH45851 Soybean extracellular 55.66 54.55
KRH74782 Soybean extracellular 55.2 54.46
Solyc02g087670.2.1 Tomato extracellular 54.52 54.04
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 54.07 53.95
Solyc01g010740.2.1 Tomato endoplasmic reticulum, extracellular 53.39 53.76
KRH69345 Soybean extracellular 54.3 53.69
PGSC0003DMT400002241 Potato extracellular 53.17 53.53
PGSC0003DMT400014086 Potato extracellular 54.07 53.47
Solyc03g058890.2.1 Tomato extracellular 53.85 53.01
PGSC0003DMT400017862 Potato endoplasmic reticulum, extracellular 47.29 52.64
Bra026221.1-P Field mustard endoplasmic reticulum 54.52 52.62
CDY39314 Canola extracellular 54.52 52.51
PGSC0003DMT400017863 Potato extracellular 52.49 52.49
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 54.07 52.18
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 54.07 52.18
KXG22892 Sorghum cytosol 32.58 51.99
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 53.85 51.97
AT1G14420.1 Thale cress endoplasmic reticulum 53.85 51.85
Bra026832.1-P Field mustard extracellular 52.71 51.55
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 51.58 51.47
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 54.75 51.27
KRH01130 Soybean extracellular 50.23 50.45
Solyc03g058910.2.1 Tomato extracellular, golgi 45.25 50.25
PGSC0003DMT400014085 Potato extracellular, golgi 45.25 50.25
KRG93502 Soybean extracellular 50.23 50.11
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 51.81 50.11
Bra017412.1-P Field mustard extracellular 52.04 50.11
CDY04133 Canola extracellular 52.04 50.11
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 53.62 49.89
CDX78607 Canola endoplasmic reticulum, extracellular 53.62 49.89
CDX70590 Canola endoplasmic reticulum, extracellular 53.39 49.68
CDY63769 Canola extracellular 53.62 49.48
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 53.17 49.47
CDX85564 Canola extracellular 52.94 49.47
CDY45202 Canola extracellular 51.36 49.46
PGSC0003DMT400045436 Potato extracellular 51.36 49.46
CDY17432 Canola extracellular 51.36 49.46
Solyc05g007080.2.1 Tomato extracellular 50.91 49.34
Bra024811.1-P Field mustard extracellular 51.13 49.24
CDY03043 Canola extracellular 51.13 49.24
AT2G02720.1 Thale cress extracellular, vacuole 50.68 49.23
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 52.04 49.04
Bra023504.1-P Field mustard extracellular 53.17 48.86
CDX91953 Canola endoplasmic reticulum, extracellular 52.04 48.83
CDX74293 Canola endoplasmic reticulum, extracellular 52.04 48.83
CDY66593 Canola endoplasmic reticulum, extracellular 54.98 48.7
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 54.98 48.7
CDX69550 Canola endoplasmic reticulum, extracellular 54.98 48.7
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 51.81 48.62
CDX81636 Canola endoplasmic reticulum 51.81 47.31
CDY53552 Canola extracellular 52.49 46.87
KXG25802 Sorghum plastid 50.68 46.28
KXG38421 Sorghum extracellular 48.87 44.81
GSMUA_Achr7P08840_001 Banana nucleus 57.69 38.06
Solyc02g067450.2.1 Tomato extracellular 50.45 36.2
CDY04136 Canola mitochondrion, nucleus 0.45 1.32
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2UniProt:A0A1W0VRA4InterPro:AmbAllergenGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009987GO:GO:0016829GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334
EnsemblPlants:OQU75805ProteinID:OQU75805ProteinID:OQU75805.1PFAM:PF00544PFAM:PF04431PRINTS:PR00807
PANTHER:PTHR31683PANTHER:PTHR31683:SF60InterPro:Pec_lyaseInterPro:Pec_lyase_NInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulence
SMART:SM00656EnsemblPlantsGene:SORBI_3010G034300SUPFAM:SSF51126SignalP:SignalP-noTMUniParc:UPI0009DC8EE0SEG:seg
Description
hypothetical protein
Coordinates
chr10:-:2790144..2792210
Molecular Weight (calculated)
49307.6 Da
IEP (calculated)
9.504
GRAVY (calculated)
-0.353
Length
442 amino acids
Sequence
(BLAST)
001: MSTMAAVILR SRRRHHLSVL FCAVVLAAAA QASSSNNNNV TSDEVYWAER AEAARSRNRA AYVSDPVAAM NRFNADVLRA TTRRALASGP CMATNPIDRC
101: WRCRSDWAAD RKRLARCARG FGHRTTGGAA GKLYVVTDPS DDEMIVPRKG TLRHAVIQDR PLWIVFARDM VIRLRQELIV TSDKTIDGRG AQVHVVGAQV
201: TLQSVHDVIL HNLHIHDAVA HSGGMIRDSK RHTGMRTRSD GDGISVLSSS NVWIDHVSMS RCADGLIDVV NGSTAITVSN SHFTHHDHVM LFGASNDNPQ
301: DEVMQITVAF NHFGRGLVQR MPRCRYGFFH VVNNDYTHWI MYAIGGNKNP TIISQGNRFI APDDPNAKEV TKREYTAYKD YKEWVWKSQG DVMMNGAFFN
401: ESGGQNERKY DELDFIPAKH GRYVGQLTRF AGPLKCIVGQ PC
Best Arabidopsis Sequence Match ( AT5G15110.1 )
(BLAST)
001: MEMVRLSKLM FTFCIAVLIP TIRGNISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH ERHYDNSTDV TTPEEDGDAK PEEEEKEFIE MLGSSTNSTR
101: RSLRGKGKGK WSKLKGPCTA SNPIDKCWRC RSDWAKRRKK LTRCVRGFGH RTTGGKRGRI YVVTSNLDED MVNPKPGTLR HAVIQKEPLW IIFKNDMSIR
201: LNQELLINSH KTIDARGANV HVAHGAGITM QFVKNVVIHG LHIHHISESS GGMIRDSVDH FGMRTRADGD GLSIYGSSNI WLDHISMSKC QDGLIDAIVG
301: STGITISNSH FTHHNDVMLL GAQNTNEADK HMQVTVAYNH FGKGLVQRMP RIRWGFVHVV NNDYTHWELY AIGGSQGPTI LSHGNRFIAP PHKPHYREVT
401: KRDYASEDEW KHWNWRSDKD VFMNGAYFRQ SGNPQYKCAH TRQQMIKPKN GLAVSKLTKY AGALDCRVGR RC
Arabidopsis Description
Pectate lyase family protein [Source:TAIR;Acc:AT5G15110]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.