Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045436 | Potato | extracellular | 96.71 | 96.08 |
| Solyc01g010740.2.1 | Tomato | endoplasmic reticulum, extracellular | 68.86 | 71.53 |
| GSMUA_Achr10P... | Banana | cytosol | 42.11 | 55.49 |
| TraesCS4A01G385700.1 | Wheat | cytosol | 26.1 | 54.34 |
| GSMUA_Achr6P00830_001 | Banana | endoplasmic reticulum, extracellular | 51.97 | 54.23 |
| Solyc03g058890.2.1 | Tomato | extracellular | 53.07 | 53.9 |
| GSMUA_Achr2P16830_001 | Banana | endoplasmic reticulum, extracellular | 51.75 | 53.88 |
| Solyc03g111690.2.1 | Tomato | nucleus | 47.59 | 53.85 |
| GSMUA_Achr10P... | Banana | extracellular | 45.83 | 53.59 |
| Solyc05g014000.2.1 | Tomato | extracellular, nucleus | 46.93 | 53.37 |
| Solyc03g113150.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 50.88 | 53.33 |
| Solyc06g071020.2.1 | Tomato | extracellular | 50.88 | 53.33 |
| Solyc02g093580.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 47.15 | 53.22 |
| HORVU6Hr1G038630.1 | Barley | extracellular | 46.93 | 52.84 |
| TraesCS7B01G261700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 51.1 | 52.48 |
| Solyc02g087670.2.1 | Tomato | extracellular | 51.32 | 52.47 |
| EES06507 | Sorghum | golgi, vacuole | 50.66 | 51.91 |
| Os06t0583900-01 | Rice | plasma membrane | 50.88 | 51.79 |
| TraesCS7D01G356700.1 | Wheat | extracellular | 50.22 | 51.58 |
| Zm00001d046389_P007 | Maize | endoplasmic reticulum, extracellular | 48.9 | 51.5 |
| TraesCS7A01G365700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 49.78 | 51.13 |
| Zm00001d000216_P001 | Maize | golgi, vacuole | 48.9 | 50.91 |
| OQU75805 | Sorghum | mitochondrion | 49.34 | 50.91 |
| Solyc06g071840.1.1 | Tomato | vacuole | 39.91 | 50.7 |
| HORVU7Hr1G085860.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 49.34 | 50.68 |
| TraesCS7A01G086600.1 | Wheat | endoplasmic reticulum, extracellular | 49.56 | 50.45 |
| EER88571 | Sorghum | endoplasmic reticulum, plasma membrane | 50.0 | 50.22 |
| Os02t0214400-01 | Rice | plasma membrane | 48.25 | 49.33 |
| Solyc09g061890.2.1 | Tomato | endoplasmic reticulum, extracellular | 47.37 | 49.2 |
| Os06t0144200-01 | Rice | extracellular, plasma membrane | 48.25 | 48.89 |
| Solyc03g058910.2.1 | Tomato | extracellular, golgi | 42.54 | 48.74 |
| TraesCS6B01G211900.1 | Wheat | extracellular, golgi, vacuole | 45.39 | 48.71 |
| Zm00001d036158_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 48.25 | 48.57 |
| TraesCS6D01G170500.1 | Wheat | golgi | 44.96 | 48.24 |
| EER87830 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 49.12 | 48.17 |
| Os06t0144900-01 | Rice | mitochondrion | 49.34 | 47.57 |
| Solyc06g083580.2.1 | Tomato | nucleus | 45.18 | 47.47 |
| Solyc09g091430.2.1 | Tomato | nucleus | 46.05 | 46.56 |
| Zm00001d036945_P001 | Maize | endoplasmic reticulum | 42.76 | 46.43 |
| Solyc11g008140.1.1 | Tomato | plasma membrane | 44.96 | 45.66 |
| TraesCS6A01G184500.2 | Wheat | extracellular, golgi, vacuole | 46.05 | 45.36 |
| HORVU7Hr1G019500.1 | Barley | mitochondrion | 49.12 | 43.08 |
| Solyc05g055510.2.1 | Tomato | plasma membrane | 46.27 | 42.71 |
| Solyc09g008380.2.1 | Tomato | nucleus | 44.96 | 42.44 |
| Solyc03g071570.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 43.86 | 39.68 |
| GSMUA_Achr7P08840_001 | Banana | nucleus | 54.61 | 37.16 |
| Solyc02g067450.2.1 | Tomato | extracellular | 49.12 | 36.36 |
| Solyc02g080910.2.1 | Tomato | extracellular | 41.23 | 24.77 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | InterPro:AmbAllergen | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | UniProt:K4BWN4 |
| PFAM:PF00544 | PFAM:PF04431 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF7 | InterPro:Pec_lyase |
| InterPro:Pec_lyase_N | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| EnsemblPlantsGene:Solyc05g007080.2 | EnsemblPlants:Solyc05g007080.2.1 | TMHMM:TMhelix | UniParc:UPI00027658AB | SEG:seg | : |
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4BWN4]
Coordinates
chr5:+:1665367..1668386
Molecular Weight (calculated)
51080.8 Da
IEP (calculated)
8.353
GRAVY (calculated)
-0.416
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MASISFNNSV IFLFSLFCFS SIIPKLYANI ADFDPYLEKR AEEALQSSLA AYNENPEGVT QIFNKEVGET LLNGTRRHLK EKDKEDKNDK DDKEGDEKSV
101: DGCKAYNPID KCWRCDKNWA NNRKALADCA RGFGHGTTGG KDGRFYVVTD PSDNNVEEPV PGTLRHAVIQ EEPLWIIFEK SMIIRLKQEL MINSNKTIDG
201: RGVSVHVAYG GGLTLQFVHN VIVHNIRVHH ILSKNGGMIR DSVKHIGLRT VSDGDAISLF GANRIWIDHC TLTKGADGLL DAIMASTAIT ISNCKFNHHN
301: DVMLLGANDA FPQDKIMQVT VAFNRFGKGC IQRMPRCRWG FFHVVNNDYA KWEMYAIGGT ANPTIISQGN RFKAADNPNT KEVTNRNGAP EALWRNWQWR
401: SEGDLFKNGA FFRESGPEIK STPFTEHTTI QFEPAKFVGR LTRKAGVIQC KIGKAC
101: DGCKAYNPID KCWRCDKNWA NNRKALADCA RGFGHGTTGG KDGRFYVVTD PSDNNVEEPV PGTLRHAVIQ EEPLWIIFEK SMIIRLKQEL MINSNKTIDG
201: RGVSVHVAYG GGLTLQFVHN VIVHNIRVHH ILSKNGGMIR DSVKHIGLRT VSDGDAISLF GANRIWIDHC TLTKGADGLL DAIMASTAIT ISNCKFNHHN
301: DVMLLGANDA FPQDKIMQVT VAFNRFGKGC IQRMPRCRWG FFHVVNNDYA KWEMYAIGGT ANPTIISQGN RFKAADNPNT KEVTNRNGAP EALWRNWQWR
401: SEGDLFKNGA FFRESGPEIK STPFTEHTTI QFEPAKFVGR LTRKAGVIQC KIGKAC
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.