Factsheet for TraesCS6B01G211900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G170500.1	Wheat	golgi	96.0	96.0
TraesCS6A01G184500.2	Wheat	extracellular, golgi, vacuole	92.94	85.31
HORVU6Hr1G038630.1	Barley	extracellular	80.47	84.44
Os02t0214400-01	Rice	plasma membrane	64.94	61.88
EES06507	Sorghum	golgi, vacuole	63.76	60.9
GSMUA_Achr10P...	Banana	cytosol	49.41	60.69
TraesCS7B01G261700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	61.65	59.01
GSMUA_Achr10P...	Banana	extracellular	50.82	55.38
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	56.71	54.9
VIT_17s0000g05740.t01	Wine grape	extracellular	55.06	54.55
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	55.76	53.5
KRH01130	Soybean	extracellular	55.29	53.41
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	54.59	53.09
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	54.59	52.97
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	54.12	52.87
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	54.12	52.87
PGSC0003DMT400083135	Potato	extracellular	53.88	52.64
Solyc06g071020.2.1	Tomato	extracellular	53.18	51.95
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	54.12	51.92
KRH63402	Soybean	extracellular	52.71	51.49
KRG93502	Soybean	extracellular	53.65	51.47
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	53.41	51.24
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	47.53	50.88
PGSC0003DMT400002241	Potato	extracellular	52.47	50.8
KRH54508	Soybean	extracellular	39.76	50.75
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	51.76	50.11
Solyc02g087670.2.1	Tomato	extracellular	52.24	49.78
PGSC0003DMT400003310	Potato	extracellular	52.0	49.55
PGSC0003DMT400014086	Potato	extracellular	51.29	48.77
PGSC0003DMT400014085	Potato	extracellular, golgi	45.65	48.74
Solyc03g058910.2.1	Tomato	extracellular, golgi	45.65	48.74
Solyc03g058890.2.1	Tomato	extracellular	51.29	48.55
KRH74782	Soybean	extracellular	50.82	48.21
AT3G01270.1	Thale cress	endoplasmic reticulum, extracellular	53.65	48.0
PGSC0003DMT400017863	Potato	extracellular	49.88	47.96
KRH45851	Soybean	extracellular	50.82	47.89
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	51.53	47.82
CDX96854	Canola	endoplasmic reticulum, extracellular, plasma membrane	51.53	47.82
Bra026832.1-P	Field mustard	extracellular	50.82	47.79
CDX74293	Canola	endoplasmic reticulum, extracellular	52.94	47.77
CDX91953	Canola	endoplasmic reticulum, extracellular	52.94	47.77
TraesCS6B01G168400.1	Wheat	plastid	42.59	47.63
CDY68729	Canola	endoplasmic reticulum, extracellular, plasma membrane	51.29	47.6
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	52.47	47.35
CDY28691	Canola	endoplasmic reticulum, extracellular, vacuole	52.24	47.33
AT1G14420.1	Thale cress	endoplasmic reticulum	50.82	47.06
Bra026221.1-P	Field mustard	endoplasmic reticulum	50.59	46.94
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	51.76	46.61
KRH69345	Soybean	extracellular	48.94	46.53
CDY39314	Canola	extracellular	50.12	46.41
CDY17432	Canola	extracellular	49.88	46.19
TraesCS2B01G024500.2	Wheat	golgi	52.24	46.15
CDX78607	Canola	endoplasmic reticulum, extracellular	51.53	46.11
CDX70590	Canola	endoplasmic reticulum, extracellular	51.53	46.11
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	51.53	46.11
CDY04133	Canola	extracellular	49.65	45.97
Bra017412.1-P	Field mustard	extracellular	49.65	45.97
CDY63769	Canola	extracellular	51.76	45.93
CDX85564	Canola	extracellular	50.82	45.67
Solyc05g007080.2.1	Tomato	extracellular	48.71	45.39
Bra023504.1-P	Field mustard	extracellular	51.06	45.11
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	48.47	45.08
PGSC0003DMT400045436	Potato	extracellular	48.47	44.88
CDX69550	Canola	endoplasmic reticulum, extracellular	52.47	44.69
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	52.47	44.69
CDY66593	Canola	endoplasmic reticulum, extracellular	52.47	44.69
CDY45202	Canola	extracellular	48.0	44.44
Bra024811.1-P	Field mustard	extracellular	48.0	44.44
AT2G02720.1	Thale cress	extracellular, vacuole	47.53	44.4
CDY03043	Canola	extracellular	47.76	44.23
CDY53552	Canola	extracellular	50.59	43.43
CDX81636	Canola	endoplasmic reticulum	49.41	43.39
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	48.24	43.07
GSMUA_Achr7P08840_001	Banana	nucleus	54.35	34.48
Solyc02g067450.2.1	Tomato	extracellular	48.71	33.6
CDY04136	Canola	mitochondrion, nucleus	0.71	1.97

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0030570	InterPro:IPR012334	PFAM:PF00544	PFAM:PF04431	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF32	InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G211900	EnsemblPlants:TraesCS6B01G211900.1	SEG:seg

Description

No Description!

Coordinates

chr6B:-:280048521..280050041

Molecular Weight (calculated)

46993.8 Da

IEP (calculated)

9.316

GRAVY (calculated)

-0.407

Length

425 amino acids

Sequence
(BLAST)

001: MDRSLQWSRP ASLLLLGAAF LAATAVASAN PAYNPDPYSV VDHFNRAVHR STSPRRALYS EKKSKKPKYT GPCMATNPID RCWRCRKDWA TDRQRMARCA
101: KGFGRETTGG LKGKIYIVTD ANDDDFTNPR PGTLRWGAVQ TEPLWIIFAR DMVINASQEI IIQSDKTIDG RGAQVHVANG GGLTIQHQNN VIINNLHVHG
201: IVHTSGGNVS MTATHSTIRT RADGDGVSIF NATKVWVDHL SMDNCEDGMI DVVAMSTAVT VSNTHLAHHN DVMLFGATDG KEEDKVMQVT VAFNHFGRGL
301: VQRMPRCRYG FFHVVNNDYT NWLMYAIGGS SAPTIVSQGN RYRAPPNMAA KEATKREYAA ESEWKNWVWT SEGDLMINDA FFITSGGKIS QKLNGKDLLK
401: PKPGEYVRRL TRFAGPLDCN AGSPC

Best Arabidopsis Sequence Match ( AT3G01270.1 )
(BLAST)

001: METARLFKLV CVICIASLIP TIRANVADET DEYWVNKANE ARKHTLMAYH PDPYEIVDHF HERHYDNSTD VEGTEEEKAV ASEEEDVIEM ISSPTNSTRR
101: SLTGRGKGKG KGKWSKLTGP CTASNPIDKC WRCQPDWARR RKKLVHCVRG FGYRTTGGKR GRIYVVTSPR DDDMVNPRPG TLRHAVIQKE PLWIVFKHDM
201: SIRLSQELMI TSDKTIDARG ANVHIAYGAG ITMQYVHNII IHGLHVHHIV KSSGGLIRDS INHFGHRGEA DGDGISIFGA TNIWLDHISM SKCQDGLIDA
301: IMGSTAITIS NSHFTHHNDV MLLGAQNNNM DDKKMQVTVA YNHFGKGLVQ RMPRVRWGFV HVVNNDYTHW ELYAIGGSQG PTILSHGNRF IAPPHKQHYR
401: EVTKRDYASE SEWKNWNWRS EKDVFMNNAY FRQSGNPHFK CSHSRQQMIK PKNGMAVSKL TKYAGALDCR VGKAC

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q08A70]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.