Factsheet for TraesCS6A01G184500.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G170500.1	Wheat	golgi	86.83	94.59
TraesCS6B01G211900.1	Wheat	extracellular, golgi, vacuole	85.31	92.94
HORVU6Hr1G038630.1	Barley	extracellular	74.73	85.43
Os02t0214400-01	Rice	plasma membrane	61.77	64.13
EES06507	Sorghum	golgi, vacuole	58.96	61.35
GSMUA_Achr10P...	Banana	cytosol	45.14	60.4
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.88	60.36
TraesCS4A01G385700.1	Wheat	cytosol	27.65	58.45
GSMUA_Achr10P...	Banana	extracellular	47.52	56.41
VIT_17s0000g05740.t01	Wine grape	extracellular	51.62	55.71
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	52.7	55.58
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	51.19	54.23
KRH01130	Soybean	extracellular	51.4	54.09
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	50.76	54.02
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	50.54	53.79
PGSC0003DMT400083135	Potato	extracellular	50.54	53.79
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	51.19	53.5
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	50.54	53.42
Solyc06g071020.2.1	Tomato	extracellular	49.68	52.87
PGSC0003DMT400002241	Potato	extracellular	49.68	52.39
KRH63402	Soybean	extracellular	48.81	51.95
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	49.46	51.69
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	49.68	51.34
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	49.03	51.24
KRH54508	Soybean	extracellular	36.72	51.05
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	48.38	51.03
KRG93502	Soybean	extracellular	48.81	51.02
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	43.63	50.88
PGSC0003DMT400003310	Potato	extracellular	48.81	50.67
Solyc02g087670.2.1	Tomato	extracellular	48.6	50.45
TraesCS6A01G139800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	40.82	50.0
PGSC0003DMT400014085	Potato	extracellular, golgi	42.33	49.25
PGSC0003DMT400014086	Potato	extracellular	47.52	49.22
Solyc03g058890.2.1	Tomato	extracellular	47.52	49.0
Solyc03g058910.2.1	Tomato	extracellular, golgi	42.12	48.99
CDX74293	Canola	endoplasmic reticulum, extracellular	49.68	48.83
CDX91953	Canola	endoplasmic reticulum, extracellular	49.68	48.83
AT3G01270.1	Thale cress	endoplasmic reticulum, extracellular	49.89	48.63
KRH74782	Soybean	extracellular	46.65	48.21
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	49.03	48.2
CDY28691	Canola	endoplasmic reticulum, extracellular, vacuole	48.81	48.19
KRH45851	Soybean	extracellular	46.65	47.89
CDX96854	Canola	endoplasmic reticulum, extracellular, plasma membrane	47.3	47.82
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	47.3	47.82
Bra026832.1-P	Field mustard	extracellular	46.65	47.79
PGSC0003DMT400017863	Potato	extracellular	45.57	47.74
CDY68729	Canola	endoplasmic reticulum, extracellular, plasma membrane	47.08	47.6
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	48.38	47.46
AT1G14420.1	Thale cress	endoplasmic reticulum	46.65	47.06
CDY63769	Canola	extracellular	48.6	46.97
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	48.16	46.95
CDX70590	Canola	endoplasmic reticulum, extracellular	48.16	46.95
CDX78607	Canola	endoplasmic reticulum, extracellular	48.16	46.95
CDX85564	Canola	extracellular	47.73	46.72
CDY17432	Canola	extracellular	46.22	46.62
KRH69345	Soybean	extracellular	44.71	46.31
Bra026221.1-P	Field mustard	endoplasmic reticulum	45.79	46.29
Bra017412.1-P	Field mustard	extracellular	45.79	46.19
CDY04133	Canola	extracellular	45.79	46.19
Bra023504.1-P	Field mustard	extracellular	47.95	46.15
Solyc05g007080.2.1	Tomato	extracellular	45.36	46.05
PGSC0003DMT400045436	Potato	extracellular	45.57	45.97
CDY39314	Canola	extracellular	45.36	45.75
AT2G02720.1	Thale cress	extracellular, vacuole	44.71	45.49
TraesCS2A01G016500.1	Wheat	golgi	47.08	45.32
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	44.71	45.3
Bra024811.1-P	Field mustard	extracellular	44.71	45.1
CDY45202	Canola	extracellular	44.71	45.1
CDX69550	Canola	endoplasmic reticulum, extracellular	48.38	44.89
CDY66593	Canola	endoplasmic reticulum, extracellular	48.38	44.89
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	48.38	44.89
CDY03043	Canola	extracellular	44.49	44.88
CDX81636	Canola	endoplasmic reticulum	45.79	43.8
CDY53552	Canola	extracellular	46.44	43.43
TraesCS1A01G143600.1	Wheat	extracellular	42.76	41.25
GSMUA_Achr7P08840_001	Banana	nucleus	50.54	34.93
Solyc02g067450.2.1	Tomato	extracellular	44.71	33.6
CDY04136	Canola	mitochondrion, nucleus	0.65	1.97

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0030570	InterPro:IPR012334	PFAM:PF00544	PFAM:PF04431	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF32	InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6A01G184500	EnsemblPlants:TraesCS6A01G184500.2	SEG:seg

Description

No Description!

Coordinates

chr6A:+:215527842..215529367

Molecular Weight (calculated)

51727.5 Da

IEP (calculated)

9.816

GRAVY (calculated)

-0.482

Length

463 amino acids

Sequence
(BLAST)

001: MDRSLQWSRP ASLLLLGAAF LAAAAAVTSA NPAYNPDPYS VVDHFNRAVH RSTSPRRALS SDKSKKAKYT GPCMATNPID RCWRCRKDWA TDRQRMARCA
101: KGFGRETTGG LKGKIYTVTD PNDDDFTNPR PGSLRWGVVQ TEPLWIIFAR DMVINASQEI IIQSDKTIDG RGAQVHVANG GGLTVQHQNN VIINNLHVHG
201: IKHTDGGNVS MTATHSTIRT RADGDGVSIF NATKVWVDHL SMDNCEDGMV DVVAMSTAVT ISNTHLAHHN DVMLFGADDK KPEDKVMQVT VAFNHFGRGL
301: VQRMPRCRYG FFHVVNNDYT NWLMYAIGGS SAPTILSQGN RYRAPPNMAA KEVRPLLLTP HSIYGWTHRF KSNHQFKFKR ARARIEWLEQ VTKRDYAPES
401: EWKNWVWISD GDLMINDAYF TTSGGQIGQK LNGKDLIKPK PGEYVRRLTR FAGPLDCNPG SPC

Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)

001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC

Arabidopsis Description

AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.