Skip to main content
crop-pal logo
Potato
Search for another protein from :
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • mitochondrion 1
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:mitochondrion, peroxisome, plastid, secretory
BaCelLo:secretory
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular, mitochondrion, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:peroxisome
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400014085 Potato extracellular, golgi 64.48 64.32
Solyc02g067450.2.1 Tomato extracellular 90.18 58.12
TraesCS4A01G385700.1 Wheat cytosol 31.74 57.53
GSMUA_Achr10P... Banana cytosol 45.59 52.31
PGSC0003DMT400014086 Potato extracellular 58.69 52.13
PGSC0003DMT400017863 Potato extracellular 56.93 51.13
PGSC0003DMT400046723 Potato endoplasmic reticulum, golgi, vacuole 55.92 51.03
PGSC0003DMT400083135 Potato extracellular 54.66 49.89
HORVU6Hr1G038630.1 Barley extracellular 50.88 49.88
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 53.9 48.75
PGSC0003DMT400003310 Potato extracellular 54.41 48.43
PGSC0003DMT400039385 Potato extracellular 49.12 48.39
PGSC0003DMT400027955 Potato extracellular 48.87 48.38
KRH45851 Soybean extracellular 54.66 48.12
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 53.65 48.08
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 52.64 47.83
Bra026832.1-P Field mustard extracellular 54.41 47.79
GSMUA_Achr10P... Banana extracellular 46.85 47.69
PGSC0003DMT400032910 Potato endoplasmic reticulum, extracellular, vacuole 48.36 47.64
EES06507 Sorghum golgi, vacuole 53.4 47.64
KRH74782 Soybean extracellular 53.65 47.54
TraesCS6B01G211900.1 Wheat extracellular, golgi, vacuole 50.88 47.53
TraesCS7A01G365700.1 Wheat endoplasmic reticulum, extracellular, vacuole 52.9 47.3
TraesCS7D01G356700.1 Wheat extracellular 52.9 47.3
OQU75805 Sorghum mitochondrion 52.64 47.29
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 52.14 47.26
PGSC0003DMT400002241 Potato extracellular 52.14 47.15
TraesCS7B01G261700.1 Wheat endoplasmic reticulum, extracellular, vacuole 52.64 47.07
TraesCS6D01G170500.1 Wheat golgi 50.38 47.06
Os02t0214400-01 Rice plasma membrane 52.64 46.86
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 53.9 46.72
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 53.9 46.72
PGSC0003DMT400069632 Potato vacuole 47.61 46.67
Bra017412.1-P Field mustard extracellular 53.9 46.62
CDY04133 Canola extracellular 53.9 46.62
Zm00001d000216_P001 Maize golgi, vacuole 51.39 46.58
KRH69345 Soybean extracellular 52.39 46.53
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 53.65 46.51
KRG93502 Soybean extracellular 51.89 46.5
AT1G14420.1 Thale cress endoplasmic reticulum 53.65 46.41
TraesCS7A01G086600.1 Wheat endoplasmic reticulum, extracellular 52.14 46.21
Zm00001d046389_P007 Maize endoplasmic reticulum, extracellular 50.38 46.19
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 54.41 46.06
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 51.39 46.05
CDY17432 Canola extracellular 53.15 45.97
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 51.13 45.82
Bra024811.1-P Field mustard extracellular 52.9 45.75
CDY45202 Canola extracellular 52.9 45.75
KRH01130 Soybean extracellular 50.63 45.68
CDX74293 Canola endoplasmic reticulum, extracellular 54.16 45.65
CDX91953 Canola endoplasmic reticulum, extracellular 54.16 45.65
Bra026221.1-P Field mustard endoplasmic reticulum 52.64 45.63
EER88571 Sorghum endoplasmic reticulum, plasma membrane 52.14 45.59
Os06t0583900-01 Rice plasma membrane 51.39 45.54
CDY03043 Canola extracellular 52.64 45.53
HORVU7Hr1G085860.1 Barley endoplasmic reticulum, extracellular, vacuole 50.88 45.5
AT2G02720.1 Thale cress extracellular, vacuole 52.14 45.49
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 53.9 45.44
Os06t0144200-01 Rice extracellular, plasma membrane 51.39 45.33
CDY39314 Canola extracellular 52.39 45.32
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 51.89 45.08
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 53.9 45.05
Zm00001d036158_P001 Maize endoplasmic reticulum, extracellular, vacuole 51.39 45.03
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 53.65 44.84
CDX78607 Canola endoplasmic reticulum, extracellular 53.65 44.84
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 53.15 44.7
PGSC0003DMT400045436 Potato extracellular 51.64 44.66
PGSC0003DMT400040893 Potato endoplasmic reticulum, vacuole 49.37 44.65
CDX70590 Canola endoplasmic reticulum, extracellular 53.4 44.63
Os06t0144900-01 Rice mitochondrion 52.64 44.19
CDX69550 Canola endoplasmic reticulum, extracellular 55.16 43.89
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 55.16 43.89
EER87830 Sorghum endoplasmic reticulum, extracellular, vacuole 51.39 43.87
CDX81636 Canola endoplasmic reticulum 53.4 43.8
CDY66593 Canola endoplasmic reticulum, extracellular 54.91 43.69
TraesCS6A01G184500.2 Wheat extracellular, golgi, vacuole 50.88 43.63
CDX85564 Canola extracellular 51.89 43.55
PGSC0003DMT400042395 Potato extracellular 41.56 43.31
PGSC0003DMT400076251 Potato extracellular 48.87 43.3
CDY53552 Canola extracellular 53.9 43.23
CDY63769 Canola extracellular 51.89 43.01
Bra023504.1-P Field mustard extracellular 51.89 42.83
PGSC0003DMT400042396 Potato endoplasmic reticulum, extracellular, vacuole 42.57 42.57
Zm00001d036945_P001 Maize endoplasmic reticulum 44.33 41.9
PGSC0003DMT400009869 Potato cytosol 44.58 41.55
PGSC0003DMT400051938 Potato endoplasmic reticulum, extracellular 47.86 41.3
PGSC0003DMT400011046 Potato mitochondrion 29.97 40.89
HORVU7Hr1G019500.1 Barley mitochondrion 52.14 39.81
PGSC0003DMT400079776 Potato plasma membrane 46.1 37.35
PGSC0003DMT400060374 Potato extracellular, plasma membrane, vacuole 45.34 31.52
GSMUA_Achr7P08840_001 Banana nucleus 53.15 31.49
CDY04136 Canola mitochondrion, nucleus 0.5 1.32
Protein Annotations
KEGG:00040+4.2.2.2EntrezGene:102579138Gene3D:2.160.20.10MapMan:21.3.5.2InterPro:AmbAllergenGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009987GO:GO:0016829GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334
UniProt:M1A9L7PFAM:PF00544EnsemblPlantsGene:PGSC0003DMG400006937PGSC:PGSC0003DMG400006937EnsemblPlants:PGSC0003DMT400017862PRINTS:PR00807
PANTHER:PTHR31683PANTHER:PTHR31683:SF7InterPro:Pec_lyaseInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00656
SUPFAM:SSF51126SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0002951CDCRefSeq:XP_006357121.1SEG:seg
Description
Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400006937]
Coordinates
chr2:-:26003650..26005412
Molecular Weight (calculated)
44345.2 Da
IEP (calculated)
8.570
GRAVY (calculated)
-0.344
Length
397 amino acids
Sequence
(BLAST)
001: MEMSKTRTNV ALVVLLVTCL TVGATVAADN STRRHLAKKY KGPCMATNLI DKCWRCDPHW ADHREKYADC AMGFGSKAIG GKGGRVYVVT DNSDKDVENP
101: TPGTLRHAVI QKEPLWIIFE RHMHIKLKRE LLMQSHKTID GRGFNIHIEK GAGLKMQSVN NIIITNLHVH NIGITPGGMI RDSVDHVGIR SEDEGDGISL
201: FAATDVWIDH VSMSRATDGL IDAVQGSTGI TISNCHFTDH DKAMLFGAND NHVEDKKMQI TLAYNHFGKR LDQRMPRVRF GFFHIVNNDY THWMRYAIGG
301: NSGATIISQG NRFIAQASLL IKEVTHREKA EESEWKNWTW LSIDDDMQNG AFFRTSGDQD ALRKLKNLNL IPAEPSYKVG ILTKFAGSLS CTAGRPC
Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.