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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • extracellular 8
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400017862 Potato endoplasmic reticulum, extracellular 58.12 90.18
Solyc03g058910.2.1 Tomato extracellular, golgi 41.4 64.07
Solyc03g058890.2.1 Tomato extracellular 43.99 60.36
TraesCS4A01G385700.1 Wheat cytosol 20.13 56.62
Solyc03g113150.2.1 Tomato endoplasmic reticulum, golgi, vacuole 39.12 55.4
Solyc02g087670.2.1 Tomato extracellular 39.61 54.71
Solyc06g071020.2.1 Tomato extracellular 38.47 54.48
GSMUA_Achr10P... Banana cytosol 30.52 54.34
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 37.99 53.3
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 36.85 51.95
Solyc01g010740.2.1 Tomato endoplasmic reticulum, extracellular 37.01 51.94
Bra026832.1-P Field mustard extracellular 37.66 51.33
GSMUA_Achr10P... Banana extracellular 32.47 51.28
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 36.85 51.24
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 36.2 50.91
Zm00001d000216_P001 Maize golgi, vacuole 36.2 50.91
EES06507 Sorghum golgi, vacuole 36.69 50.79
AT1G14420.1 Thale cress endoplasmic reticulum 37.82 50.76
Bra017412.1-P Field mustard extracellular 37.82 50.76
CDY04133 Canola extracellular 37.82 50.76
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 37.66 50.66
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 37.66 50.66
HORVU6Hr1G038630.1 Barley extracellular 33.28 50.62
KRH45851 Soybean extracellular 37.01 50.55
OQU75805 Sorghum mitochondrion 36.2 50.45
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 37.5 50.44
KRH74782 Soybean extracellular 36.53 50.22
AT2G02720.1 Thale cress extracellular, vacuole 37.01 50.11
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 37.18 50.11
CDY45202 Canola extracellular 37.34 50.11
Bra024811.1-P Field mustard extracellular 37.34 50.11
CDY17432 Canola extracellular 37.18 49.89
TraesCS7B01G261700.1 Wheat endoplasmic reticulum, extracellular, vacuole 35.88 49.77
CDY03043 Canola extracellular 37.01 49.67
Solyc05g014000.2.1 Tomato extracellular, nucleus 32.31 49.63
TraesCS7A01G086600.1 Wheat endoplasmic reticulum, extracellular 36.04 49.55
TraesCS7D01G356700.1 Wheat extracellular 35.71 49.55
KRH69345 Soybean extracellular 35.88 49.44
KRG93502 Soybean extracellular 35.55 49.44
Os06t0144200-01 Rice extracellular, plasma membrane 36.04 49.33
TraesCS7A01G365700.1 Wheat endoplasmic reticulum, extracellular, vacuole 35.55 49.32
Bra026221.1-P Field mustard endoplasmic reticulum 36.53 49.13
Solyc05g007080.2.1 Tomato extracellular 36.36 49.12
Os02t0214400-01 Rice plasma membrane 35.55 49.1
CDY39314 Canola extracellular 36.36 48.8
Solyc02g093580.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 31.98 48.76
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 35.06 48.76
TraesCS6B01G211900.1 Wheat extracellular, golgi, vacuole 33.6 48.71
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 37.01 48.61
EER88571 Sorghum endoplasmic reticulum, plasma membrane 35.71 48.46
KRH01130 Soybean extracellular 34.58 48.41
Solyc03g111690.2.1 Tomato nucleus 31.66 48.39
Zm00001d046389_P007 Maize endoplasmic reticulum, extracellular 33.93 48.27
TraesCS6D01G170500.1 Wheat golgi 33.28 48.24
Os06t0583900-01 Rice plasma membrane 35.06 48.21
CDX70590 Canola endoplasmic reticulum, extracellular 37.18 48.21
CDX74293 Canola endoplasmic reticulum, extracellular 36.85 48.2
CDX91953 Canola endoplasmic reticulum, extracellular 36.85 48.2
CDX78607 Canola endoplasmic reticulum, extracellular 37.01 48.0
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 37.01 48.0
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 36.69 47.98
HORVU7Hr1G085860.1 Barley endoplasmic reticulum, extracellular, vacuole 34.58 47.97
Zm00001d036158_P001 Maize endoplasmic reticulum, extracellular, vacuole 35.23 47.9
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 36.69 47.88
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 34.42 47.86
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 36.85 47.79
Os06t0144900-01 Rice mitochondrion 36.69 47.78
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 38.31 47.29
CDX69550 Canola endoplasmic reticulum, extracellular 38.31 47.29
CDX81636 Canola endoplasmic reticulum 37.01 47.11
CDY66593 Canola endoplasmic reticulum, extracellular 38.15 47.09
EER87830 Sorghum endoplasmic reticulum, extracellular, vacuole 35.39 46.88
CDY53552 Canola extracellular 37.5 46.67
CDX85564 Canola extracellular 35.55 46.3
Solyc06g071840.1.1 Tomato vacuole 26.95 46.24
CDY63769 Canola extracellular 35.71 45.93
Bra023504.1-P Field mustard extracellular 35.55 45.53
Solyc09g061890.2.1 Tomato endoplasmic reticulum, extracellular 32.14 45.1
Zm00001d036945_P001 Maize endoplasmic reticulum 30.52 44.76
TraesCS6A01G184500.2 Wheat extracellular, golgi, vacuole 33.6 44.71
Solyc06g083580.2.1 Tomato nucleus 31.17 44.24
Solyc09g091430.2.1 Tomato nucleus 32.14 43.9
HORVU7Hr1G019500.1 Barley mitochondrion 36.04 42.69
Solyc11g008140.1.1 Tomato plasma membrane 30.84 42.32
Solyc09g008380.2.1 Tomato nucleus 31.17 39.75
Solyc05g055510.2.1 Tomato plasma membrane 31.17 38.87
Solyc03g071570.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 30.52 37.3
GSMUA_Achr7P08840_001 Banana nucleus 37.34 34.33
Solyc02g080910.2.1 Tomato extracellular 26.95 21.87
CDY04136 Canola mitochondrion, nucleus 0.32 1.32
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2InterPro:AmbAllergenGO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987
GO:GO:0016829GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334UniProt:K4B777
PFAM:PF00544PFAM:PF04431PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF7InterPro:Pec_lyase
InterPro:Pec_lyase_NInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00656SUPFAM:SSF51126SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc02g067450.2EnsemblPlants:Solyc02g067450.2.1TMHMM:TMhelixUniParc:UPI00027691D7SEG:seg:
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4B777]
Coordinates
chr2:-:37643757..37649399
Molecular Weight (calculated)
68770.0 Da
IEP (calculated)
7.688
GRAVY (calculated)
-0.394
Length
616 amino acids
Sequence
(BLAST)
001: MTKSLFIIFF VLGAIIPAFN AHIGDFDEVW RRRAEEAIKF THETYESEPA NITLAFNQKT RHTVKELSTV VSKNETIRRA LGTKKYDGPC TVTNPIDKCW
101: RCDPNWADNR KKLVECSMGF GYKTTGGRDG EFYVVTDPSD DYTTPKPGTL RHAVIQKEPL WIIFEKNMKI KLHQELIMQG DKTIDGRGAT VHITGGASIM
201: IQYTKNVIIH GLHIHDIVEG SGGMVRDAVD HIGLRTKSDG DGAAVAADNS TRRHLAKKYK GPCMATNLID KCWRCDPQWA DNREKYADCA MGFGSKATGG
301: KGGRVYVVSD NSDSDVENPA PGTLRHAVIQ TEPLWIIFER HMHIKLQREL LMQGHKTIDG RGFNIHIEKG AGLKMQGVSN VIISNLHVHN IVITPGGMIR
401: DSAEHVGIRS EDEGDGISLF SATDIWIDHV SMSRATDGLI DAVKGSTGIT ISNCHFTDHD KVMLFGANDN HVEDKKMQIT LAYNHFGKRL DQRMPRVRFG
501: FFHIVNNDYT HWMRYAIGGN NGATIISQGN RFIAQASPLI KEVTHREKVE ESEWKNWTWL SIDDDMQNGA FFKTSGDQDA LSKLQDLNLI PAEPSYKVGI
601: ITKFAGSLAC TAGRPC
Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.