Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076251 | Potato | extracellular | 97.78 | 98.44 |
| VIT_05s0051g00590.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 80.49 | 84.42 |
| HORVU2Hr1G002930.1 | Barley | cytosol | 50.33 | 82.85 |
| KRG90246 | Soybean | nucleus | 80.27 | 80.8 |
| KRH33474 | Soybean | nucleus | 80.27 | 80.44 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, vacuole | 63.86 | 80.0 |
| GSMUA_Achr8P12860_001 | Banana | cytosol | 62.53 | 79.89 |
| AT1G04680.1 | Thale cress | extracellular | 75.39 | 78.89 |
| Bra040809.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 72.95 | 77.78 |
| GSMUA_Achr5P15620_001 | Banana | cytosol | 60.53 | 77.78 |
| CDX89799 | Canola | extracellular | 73.61 | 77.03 |
| CDY15517 | Canola | endoplasmic reticulum, extracellular, golgi | 73.61 | 77.03 |
| Bra030583.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 73.61 | 77.03 |
| CDY61137 | Canola | extracellular | 73.39 | 76.8 |
| Bra032494.1-P | Field mustard | extracellular | 73.17 | 76.57 |
| GSMUA_Achr11P... | Banana | extracellular | 61.64 | 76.37 |
| Bra015341.1-P | Field mustard | extracellular | 72.95 | 76.33 |
| Solyc09g061890.2.1 | Tomato | endoplasmic reticulum, extracellular | 74.28 | 76.31 |
| Solyc06g083580.2.1 | Tomato | nucleus | 73.39 | 76.27 |
| CDX86615 | Canola | endoplasmic reticulum, extracellular, golgi | 72.73 | 76.1 |
| GSMUA_Achr4P26690_001 | Banana | extracellular | 61.64 | 75.75 |
| CDY53564 | Canola | endoplasmic reticulum, extracellular, vacuole | 75.39 | 74.73 |
| Bra032730.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 74.5 | 74.5 |
| CDY01151 | Canola | endoplasmic reticulum, extracellular, vacuole | 74.28 | 74.11 |
| GSMUA_Achr3P00290_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 66.96 | 73.48 |
| GSMUA_Achr7P04580_001 | Banana | endoplasmic reticulum, extracellular | 72.73 | 73.38 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 75.17 | 72.13 |
| Zm00001d004448_P001 | Maize | endoplasmic reticulum | 71.4 | 71.88 |
| CDY18738 | Canola | endoplasmic reticulum, extracellular | 75.17 | 71.22 |
| Solyc03g111690.2.1 | Tomato | nucleus | 63.64 | 71.22 |
| Zm00001d025067_P001 | Maize | mitochondrion | 71.18 | 70.7 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, golgi | 71.18 | 70.7 |
| Solyc05g014000.2.1 | Tomato | extracellular, nucleus | 62.75 | 70.57 |
| Solyc06g071840.1.1 | Tomato | vacuole | 55.43 | 69.64 |
| TraesCS2D01G018000.1 | Wheat | golgi | 72.28 | 68.92 |
| Solyc02g093580.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 60.75 | 67.82 |
| TraesCS2B01G024500.2 | Wheat | golgi | 72.28 | 67.78 |
| KXG25802 | Sorghum | plastid | 72.73 | 67.77 |
| TraesCS2A01G016500.1 | Wheat | golgi | 72.06 | 67.57 |
| Bra015000.1-P | Field mustard | golgi, plasma membrane | 66.74 | 67.34 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 66.96 | 66.81 |
| CDY66697 | Canola | endoplasmic reticulum, golgi | 66.08 | 66.67 |
| CDX77470 | Canola | golgi, plasma membrane | 66.96 | 65.8 |
| HORVU2Hr1G002880.2 | Barley | mitochondrion | 70.95 | 62.75 |
| Solyc11g008140.1.1 | Tomato | plasma membrane | 54.55 | 54.79 |
| Solyc09g008380.2.1 | Tomato | nucleus | 54.77 | 51.14 |
| Solyc03g113150.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 48.12 | 49.89 |
| Solyc03g058890.2.1 | Tomato | extracellular | 49.22 | 49.44 |
| Solyc06g071020.2.1 | Tomato | extracellular | 47.67 | 49.43 |
| Solyc01g010740.2.1 | Tomato | endoplasmic reticulum, extracellular | 47.89 | 49.2 |
| Solyc02g087670.2.1 | Tomato | extracellular | 48.34 | 48.88 |
| Solyc03g058910.2.1 | Tomato | extracellular, golgi | 43.02 | 48.74 |
| Solyc05g055510.2.1 | Tomato | plasma membrane | 53.22 | 48.58 |
| Solyc03g071570.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 54.1 | 48.41 |
| Solyc05g007080.2.1 | Tomato | extracellular | 46.56 | 46.05 |
| Solyc02g067450.2.1 | Tomato | extracellular | 43.9 | 32.14 |
| Solyc02g080910.2.1 | Tomato | extracellular | 45.01 | 26.75 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | InterPro:AmbAllergen | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | UniProt:K4CWG9 |
| PFAM:PF00544 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF63 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc09g091430.2 | EnsemblPlants:Solyc09g091430.2.1 |
| TMHMM:TMhelix | UniParc:UPI000276B3A8 | SEG:seg | : | : | : |
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4CWG9]
Coordinates
chr9:-:70703546..70707917
Molecular Weight (calculated)
49751.8 Da
IEP (calculated)
7.971
GRAVY (calculated)
-0.314
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMASKKWLS FSFSFLLILL LLVGVYAAGV QQSNDGSDTR TVEKEQLLSS ENSTMAVSLE DVEEKLSKHA VDDPEEVVAM VAQSIRNSTE RRKLGYFSCG
101: TGNPIDDCWR CDPNWQKNRK RLADCGIGFG RNAIGGRDGR YYVVTDNRDD DPVNPRPGTI RHAVIQEEPL WIVFSRDMVI QLKQELIMNS FKTIDARGYN
201: VHIANGACLT IQFVTNIIIH GLHIHDCKPT GNAMVRSSTT HFGWRTMADG DAISIFGSSH VWVDHNSLSH CADGLVDAVM GSTAITISNN HFAHHNEVML
301: LGHSDSYTKD KQMQVTIAYN HFGEGLIQRM PRCRHGYFHV VNNDYTHWEM YAIGGSANPT INSQGNRYLA PANRFAKEVT KRVDTAAGQW KGWNWRSSGD
401: LMLNGAYFTP SGAGASASYA RASSLGAKSS SMVGAITSSA GPLACRRSRT C
101: TGNPIDDCWR CDPNWQKNRK RLADCGIGFG RNAIGGRDGR YYVVTDNRDD DPVNPRPGTI RHAVIQEEPL WIVFSRDMVI QLKQELIMNS FKTIDARGYN
201: VHIANGACLT IQFVTNIIIH GLHIHDCKPT GNAMVRSSTT HFGWRTMADG DAISIFGSSH VWVDHNSLSH CADGLVDAVM GSTAITISNN HFAHHNEVML
301: LGHSDSYTKD KQMQVTIAYN HFGEGLIQRM PRCRHGYFHV VNNDYTHWEM YAIGGSANPT INSQGNRYLA PANRFAKEVT KRVDTAAGQW KGWNWRSSGD
401: LMLNGAYFTP SGAGASASYA RASSLGAKSS SMVGAITSSA GPLACRRSRT C
001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC
Arabidopsis Description
Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.