Factsheet for Zm00001d004448_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 4
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, peroxisome, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G002930.1	Barley	cytosol	57.37	93.8
Zm00001d025067_P001	Maize	mitochondrion	88.84	87.67
KXG25802	Sorghum	plastid	92.63	85.74
TraesCS2D01G018000.1	Wheat	golgi	83.93	79.49
TraesCS2A01G016500.1	Wheat	golgi	83.71	77.96
TraesCS2B01G024500.2	Wheat	golgi	83.04	77.34
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	70.09	76.4
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	73.21	76.28
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	75.67	75.84
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	69.2	73.29
KRH33474	Soybean	nucleus	73.44	73.11
HORVU2Hr1G002880.2	Barley	mitochondrion	83.04	72.94
KRG90246	Soybean	nucleus	72.77	72.77
AT1G04680.1	Thale cress	extracellular	69.87	72.62
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	73.44	72.47
CDY61137	Canola	extracellular	69.64	72.39
Bra015341.1-P	Field mustard	extracellular	69.42	72.16
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	69.42	72.16
Bra032494.1-P	Field mustard	extracellular	69.42	72.16
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	69.42	72.16
CDX89799	Canola	extracellular	69.2	71.93
CDX86615	Canola	endoplasmic reticulum, extracellular, golgi	69.2	71.93
PGSC0003DMT400076251	Potato	extracellular	71.65	71.65
Solyc09g091430.2.1	Tomato	nucleus	71.88	71.4
CDY53564	Canola	endoplasmic reticulum, extracellular, vacuole	71.21	70.11
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	70.31	69.84
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	70.09	69.47
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	72.1	68.72
CDY18738	Canola	endoplasmic reticulum, extracellular	70.98	66.81
Bra015000.1-P	Field mustard	golgi, plasma membrane	64.06	64.21
CDY66697	Canola	endoplasmic reticulum, golgi	63.39	63.53
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	63.84	63.27
CDX77470	Canola	golgi, plasma membrane	64.29	62.75
Zm00001d032806_P001	Maize	cytosol, plastid	52.46	54.4
Zm00001d000216_P001	Maize	golgi, vacuole	49.78	50.91
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	49.55	49.01
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	47.32	48.96
Zm00001d036945_P001	Maize	endoplasmic reticulum	41.96	44.76

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	UniProt:A0A1D6EFG0	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
ProteinID:ONM18924.1	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF34	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000843F836
EnsemblPlantsGene:Zm00001d004448	EnsemblPlants:Zm00001d004448_P001	EnsemblPlants:Zm00001d004448_T001	SEG:seg	:	:

Description

Probable pectate lyase 8

Coordinates

chr2:-:112706664..112712176

Molecular Weight (calculated)

48061.5 Da

IEP (calculated)

6.967

GRAVY (calculated)

-0.190

Length

448 amino acids

Sequence
(BLAST)

001: MAEADCSAAR TRTAGLAAAA AAAAFLVLVV VAGSAVLPGA RVRVLDGLRG RADDGDAGGP SRAVTGAVED PEAVANDVHV SIRNSTARRN LGYLSCGTGN
101: PIDDCWRCDS DWHSNRQRLA DCGIGFGRNA IGGRDGKVYV VTDPSDDDPV NPREGTLRHA VIQEEPLWII FKRDMVITLR EELIMNSFKT IDGRGANVHI
201: ANGACVTIQY VTNVIIHGLH IHDCRPTGNA MVRSSPSHYG WRTMADGDGV SIFGSSHVWV DHCSLSNCAD GLIDAIMGST AITLSNNYFT HHNEVMLLGH
301: SDSYVKDKAM QVTIAFNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI GGSAEPTINS QGNRYLAPTN PFAKEVTKRV ETAQTVWKSW NWRSEGDLLL
401: NGAYFTPSGA GASASYSRAS SLGAKSSSMV GTITSDAGAL SCRKGAAC

Best Arabidopsis Sequence Match ( AT4G13710.1 )
(BLAST)

001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC

Arabidopsis Description

Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.