Factsheet for Zm00001d032806_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38421	Sorghum	extracellular	86.81	77.8
TraesCS1A01G143600.1	Wheat	extracellular	77.78	70.0
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	76.85	69.75
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	77.08	69.67
Os10t0457200-01	Rice	plasma membrane	77.55	68.23
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	70.14	62.22
PGSC0003DMT400009869	Potato	cytosol	54.86	55.63
GSMUA_Achr4P25120_001	Banana	extracellular	56.94	55.03
Bra006976.1-P	Field mustard	cytosol	55.79	52.74
Zm00001d004448_P001	Maize	endoplasmic reticulum	54.4	52.46
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	56.94	51.57
Zm00001d025067_P001	Maize	mitochondrion	54.17	51.54
CDX73573	Canola	extracellular	56.25	51.05
GSMUA_Achr1P03320_001	Banana	plasma membrane	60.19	50.88
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	55.32	50.85
VIT_08s0007g04820.t01	Wine grape	plastid	57.18	50.51
CDX78152	Canola	extracellular	55.56	50.42
AT3G53190.1	Thale cress	extracellular	55.79	49.9
Bra028549.1-P	Field mustard	plasma membrane	56.02	49.39
CDX67560	Canola	plasma membrane	55.79	49.18
Solyc09g008380.2.1	Tomato	nucleus	54.86	49.07
CDY13312	Canola	plasma membrane	54.63	44.03
Zm00001d000216_P001	Maize	golgi, vacuole	44.21	43.61
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	41.44	41.34
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	43.29	41.28
Zm00001d036945_P001	Maize	endoplasmic reticulum	35.19	36.19

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	UniProt:A0A1D6KU41	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
ProteinID:ONM06095.1	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	UniParc:UPI00084530F4	EnsemblPlantsGene:Zm00001d032806
EnsemblPlants:Zm00001d032806_P001	EnsemblPlants:Zm00001d032806_T001	SEG:seg	:	:	:

Description

Pectate lyase 12

Coordinates

chr1:+:238892692..238896121

Molecular Weight (calculated)

46420.7 Da

IEP (calculated)

8.079

GRAVY (calculated)

-0.297

Length

432 amino acids

Sequence
(BLAST)

001: MCDGYHGQQG GNVAAADAGV RRRRRRRRRR VLDGQPNRRL LAVRGIGFGR NALGGKGGPV YVVTDPSDRD PVNPSPGTLR HAAIQEGPLW IVFASDMAIR
101: LNEELLVNSY KTIDGRGARV HVGGGGACIT LQYVSNVIIH NVHVHDCVPA GNADVRSSPT HYGWRTRSDG DGISLFGARD VWVDHCALWR CADGLVDAIM
201: GSTAITVSNS YFAHHDEVML LGASDAYLPD SGMQVTIAFN RFGPGLVQRM PRCRRGYFHI VNNDYTSWEM YAIGGSAGPT INSQGNRYIA PADPNAKEVT
301: KRVETAEGQW AGWNWRTEGD MMVNGAFFVP SGEGMEDIYG KASSTDPKSS ALVDVLTQNA GVLGDPRNDA EETGYRGVNY AGGRTGGGGG YGYGYLGMVY
401: AGGGDQRWRS HSALSLVSSA ITVVALGCLH LL

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.