Factsheet for VIT_08s0007g04820.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009869	Potato	cytosol	62.37	71.6
Bra006976.1-P	Field mustard	cytosol	66.05	70.68
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	67.89	70.64
CDX73573	Canola	extracellular	68.1	69.96
CDX78152	Canola	extracellular	67.69	69.54
CDX67560	Canola	plasma membrane	69.53	69.39
AT3G53190.1	Thale cress	extracellular	68.51	69.36
Bra028549.1-P	Field mustard	plasma membrane	69.33	69.18
Solyc09g008380.2.1	Tomato	nucleus	66.67	67.49
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	65.03	66.67
VIT_13s0019g04910.t01	Wine grape	extracellular	66.05	65.12
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	51.74	62.78
VIT_13s0019g04900.t01	Wine grape	extracellular	53.37	62.74
CDY13312	Canola	plasma membrane	68.3	62.31
VIT_17s0000g09810.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	51.12	62.03
VIT_01s0137g00240.t01	Wine grape	extracellular	50.72	61.54
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	58.49	60.08
TraesCS1A01G143600.1	Wheat	extracellular	58.49	59.58
GSMUA_Achr4P25120_001	Banana	extracellular	54.4	59.51
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	57.87	59.2
KXG38421	Sorghum	extracellular	58.28	59.13
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	50.51	57.44
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	57.06	57.29
Zm00001d032806_P001	Maize	cytosol, plastid	50.51	57.18
Os10t0457200-01	Rice	plasma membrane	56.65	56.42
VIT_07s0005g05520.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	51.33	56.4
VIT_19s0015g00510.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	44.99	54.73
GSMUA_Achr1P03320_001	Banana	plasma membrane	54.6	52.25
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	39.88	51.18
VIT_17s0000g05740.t01	Wine grape	extracellular	43.35	49.42
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	43.15	47.63
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	43.15	47.63
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	41.72	46.47

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100267540	wikigene:100267540	Gene3D:2.160.20.10	MapMan:21.3.5.2	ProteinID:ADU02588
ProteinID:ADU02588.1	InterPro:AmbAllergen	ProteinID:CCB55348	ProteinID:CCB55348.1	UniProt:E7BTN4	EMBL:FN595991
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872
EMBL:GU270837	InterPro:IPR012334	EntrezGene:LOC100267540	wikigene:LOC100267540	RefSeq:NP_001290001.1	PFAM:PF00544
PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF21	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0001F38826	ArrayExpress:VIT_08s0007g04820	EnsemblPlantsGene:VIT_08s0007g04820
EnsemblPlants:VIT_08s0007g04820.t01	unigene:Vvi.20276	RefSeq:XP_002265853	RefSeq:XP_002265853.1	SEG:seg	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:E7BTN4]

Coordinates

chr8:+:18784751..18787240

Molecular Weight (calculated)

53841.4 Da

IEP (calculated)

6.456

GRAVY (calculated)

-0.249

Length

489 amino acids

Sequence
(BLAST)

001: MLDVDHSRRK PTQTHPSASA MLRRTCIVLI SLLSSLSALA TPMQNLTLLG QHPDPEAVVQ EVQRRVNVSV SRRQTLEVSQ SDQSSSCVTG NPIDDCWRCD
101: PNWEADRQRL ADCAIGFGQY ALGGKGGQIY VVTDSSDHDA VTPRPGTLRY AVIQSDPLWI VFATNMLIKL SQELIFNSYK TLDGRGANVH IVGGGCITLQ
201: YISNVIIHNI HIHHCVQSGE ANVRSSPTHY GWRTLSDGDG ISIFGSRDIW IDHCSLSHCK DGLIDAVMGS TGITISNNFF SHHDEVMLLG HSDSYVPDSG
301: MQVTIAFNHF GEQLVQRMPR CRRGYIHVVN NDFTRWEMYA IGGSGSPTIN SQGNRYTAPS NRNAKEVTKR VDTDEKKWRD WNWRSEGDIL VNGAFFIASG
401: ETVEVLYEKA YSVEPKSAAL IDQLTTNAGV LGGSGNNLGT WRTERSGGGY GFGDDYSENM LSGSPSSFAL SSTLLPPLFL LSSFLLLYL

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.