Factsheet for VIT_13s0019g04900.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g04910.t01	Wine grape	extracellular	67.07	56.25
VIT_17s0000g09810.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	54.09	55.83
VIT_01s0137g00240.t01	Wine grape	extracellular	53.37	55.09
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	52.16	53.85
VIT_08s0007g04820.t01	Wine grape	plastid	62.74	53.37
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	52.88	51.16
VIT_07s0005g05520.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	53.12	49.66
VIT_19s0015g00510.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	46.63	48.26
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	48.32	45.37
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	48.08	45.15
VIT_17s0000g05740.t01	Wine grape	extracellular	46.39	44.99
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	41.11	44.88
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	45.19	42.82

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100251231	wikigene:100251231	Gene3D:2.160.20.10	MapMan:21.3.5.2	ProteinID:ADU02587
ProteinID:ADU02587.1	InterPro:AmbAllergen	ProteinID:CBI31414	ProteinID:CBI31414.3	UniProt:D7TM47	EMBL:FN595998
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872
EMBL:GU270836	InterPro:IPR012334	EntrezGene:LOC100251231	wikigene:LOC100251231	PFAM:PF00544	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0001BE355B	ArrayExpress:VIT_13s0019g04900	EnsemblPlantsGene:VIT_13s0019g04900	EnsemblPlants:VIT_13s0019g04900.t01
SEG:seg	:	:	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:D7TM47]

Coordinates

chr13:+:6593309..6603253

Molecular Weight (calculated)

45573.1 Da

IEP (calculated)

6.561

GRAVY (calculated)

-0.241

Length

416 amino acids

Sequence
(BLAST)

001: MLRNTHIVFI CLLGCLCPVI TATDLPHQHP NPEAVVLQVQ RRLNASLARR GLLGVHENDQ VSCLTGNPID DCWRCDPNWE ADRQHLAECG IGFGQQAVGG
101: KGGQVYVVTD HSDSGNPGSL RYAVTKPEPL WIIFSSDMLI KLKRELIVNS YKTIDGRGAN VQITGGGCIG LKYVTNVIIH NIQLHHCVPS ESDGDGISIM
201: GSRYIWIDHC SLSYCKDGLI DATLGSTAIT LSNNYFSHHD KVMLLGRSDG DEMDDGMQVT VAFNRFGEAL EQRMPRCRRG YFHVVNNDYT QWGIYAIGGS
301: ASPTINSQGN RYTAPPSTNA KEVTRRMDAK DGDWARWNWR TEGDIMVNGA YFVPSGDGLG AQFAMASSVE PKSAGFIDQL TMNAGALPPT SVVGSIPNGQ
401: VPNSIPNILD WFFKKN

Best Arabidopsis Sequence Match ( AT5G04310.3 )
(BLAST)

001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPRY YYQIIYSIAS STQTSIYFIT FIFASILLFD SFNYF

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.