Factsheet for VIT_17s0000g05740.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083135	Potato	extracellular	72.73	71.72
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	71.33	70.34
Solyc06g071020.2.1	Tomato	extracellular	71.1	70.11
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	70.63	69.66
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	70.4	68.79
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	68.76	67.51
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	68.76	66.59
KRH63402	Soybean	extracellular	66.43	65.52
KRH54508	Soybean	extracellular	50.58	65.17
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	65.73	64.38
GSMUA_Achr10P...	Banana	extracellular	58.04	63.85
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	65.27	63.21
GSMUA_Achr10P...	Banana	cytosol	50.82	63.01
TraesCS4A01G385700.1	Wheat	cytosol	31.47	61.64
VIT_17s0000g09810.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	56.18	59.8
HORVU6Hr1G038630.1	Barley	extracellular	56.41	59.75
EES06507	Sorghum	golgi, vacuole	60.14	57.98
VIT_01s0137g00240.t01	Wine grape	extracellular	54.31	57.82
TraesCS7D01G356700.1	Wheat	extracellular	59.44	57.43
Os02t0214400-01	Rice	plasma membrane	59.67	57.4
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	59.21	57.21
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	53.38	56.82
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	57.34	56.81
OQU75805	Sorghum	mitochondrion	58.51	56.79
TraesCS7B01G261700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	58.74	56.76
Os06t0583900-01	Rice	plasma membrane	59.21	56.7
Zm00001d000216_P001	Maize	golgi, vacuole	57.58	56.39
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	58.28	56.31
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	59.21	55.95
Os06t0144200-01	Rice	extracellular, plasma membrane	58.51	55.78
TraesCS6D01G170500.1	Wheat	golgi	54.78	55.29
TraesCS6B01G211900.1	Wheat	extracellular, golgi, vacuole	54.55	55.06
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	57.34	54.91
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	53.15	53.02
VIT_07s0005g05520.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	54.08	52.13
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	54.78	51.88
Zm00001d036945_P001	Maize	endoplasmic reticulum	50.58	51.67
TraesCS6A01G184500.2	Wheat	extracellular, golgi, vacuole	55.71	51.62
Os06t0144900-01	Rice	mitochondrion	56.64	51.37
EER87830	Sorghum	endoplasmic reticulum, extracellular, vacuole	55.48	51.18
VIT_19s0015g00510.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	47.79	50.99
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	43.36	48.82
HORVU7Hr1G019500.1	Barley	mitochondrion	58.04	47.88
VIT_13s0019g04900.t01	Wine grape	extracellular	44.99	46.39
VIT_13s0019g04910.t01	Wine grape	extracellular	50.58	43.75
VIT_08s0007g04820.t01	Wine grape	plastid	49.42	43.35
GSMUA_Achr7P08840_001	Banana	nucleus	67.37	43.13

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100267345	wikigene:100267345	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen
ProteinID:CCB43112	ProteinID:CCB43112.1	UniProt:F6GTA3	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	EntrezGene:LOC100267345
wikigene:LOC100267345	PFAM:PF00544	PFAM:PF04431	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF7
InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002109FF4	ArrayExpress:VIT_17s0000g05740	EnsemblPlantsGene:VIT_17s0000g05740	EnsemblPlants:VIT_17s0000g05740.t01	RefSeq:XP_002272638
RefSeq:XP_002272638.2	SEG:seg	:	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F6GTA3]

Coordinates

chr17:+:6216007..6217587

Molecular Weight (calculated)

47879.2 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.229

Length

429 amino acids

Sequence
(BLAST)

001: MRLVILIPFL VIVPAVTANI GDFDEVWQTR AEEARKAALQ AYNPHPEKVT DNFNKKVHKS FDSTNHTRRN LSKFSGLCMA TNPIDRCWRC RSDWASNRMK
101: LADCVLGFGQ KTTGGKGGKI YVVTDPSDND MVNPKPGTLR HAAIQEEPLW IIFAHSMAIR LNEELIMTSN KTIDARGANV HIANGAGLTL QFVHNIIIHG
201: LHIHDIKVGN GGLIRDSASH YGFRTRSDGD GISIFGATNI WIDHISMSNC ADGLIDAIMA STAITISNCH FTHHNEVMLF GASDGYSGDA IMQITITFNH
301: FGQGLTQRMP RCRWGFFHVV NNDYTHWLMY AIGGSHHPTI LSQGNRFIAP PDINCKEVTK RDYSPESVWK SWTWRSQGDL MMNGAFFVES GDPNFDFSNK
401: YVIRAKPGAF VTRLTRFSGA LSCREGMPC

Best Arabidopsis Sequence Match ( AT3G01270.1 )
(BLAST)

001: METARLFKLV CVICIASLIP TIRANVADET DEYWVNKANE ARKHTLMAYH PDPYEIVDHF HERHYDNSTD VEGTEEEKAV ASEEEDVIEM ISSPTNSTRR
101: SLTGRGKGKG KGKWSKLTGP CTASNPIDKC WRCQPDWARR RKKLVHCVRG FGYRTTGGKR GRIYVVTSPR DDDMVNPRPG TLRHAVIQKE PLWIVFKHDM
201: SIRLSQELMI TSDKTIDARG ANVHIAYGAG ITMQYVHNII IHGLHVHHIV KSSGGLIRDS INHFGHRGEA DGDGISIFGA TNIWLDHISM SKCQDGLIDA
301: IMGSTAITIS NSHFTHHNDV MLLGAQNNNM DDKKMQVTVA YNHFGKGLVQ RMPRVRWGFV HVVNNDYTHW ELYAIGGSQG PTILSHGNRF IAPPHKQHYR
401: EVTKRDYASE SEWKNWNWRS EKDVFMNNAY FRQSGNPHFK CSHSRQQMIK PKNGMAVSKL TKYAGALDCR VGKAC

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q08A70]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.