Factsheet for VIT_07s0005g05520.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	83.15	86.05
KRG99852	Soybean	nucleus	81.35	80.27
KRH46795	Soybean	nucleus	80.67	79.6
VIT_01s0137g00240.t01	Wine grape	extracellular	65.84	72.7
VIT_17s0000g09810.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	65.62	72.46
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	64.27	70.97
VIT_19s0015g00510.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	56.85	62.94
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	55.51	55.76
VIT_17s0000g05740.t01	Wine grape	extracellular	52.13	54.08
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	53.71	53.95
VIT_13s0019g04900.t01	Wine grape	extracellular	49.66	53.12
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	44.94	52.49
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	51.24	51.94
VIT_13s0019g04910.t01	Wine grape	extracellular	57.3	51.41
VIT_08s0007g04820.t01	Wine grape	plastid	56.4	51.33

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100251082	wikigene:100251082	Gene3D:2.160.20.10	MapMan:21.3.5.2	EMBL:AM482270
InterPro:AmbAllergen	ProteinID:CAN75298	ProteinID:CAN75298.1	ProteinID:CBI37263	ProteinID:CBI37263.3	UniProt:D7U3E6
EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	EntrezGene:LOC100251082	wikigene:LOC100251082	PFAM:PF00544	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF34	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	TIGR:TC62936	UniParc:UPI00015CC977	ArrayExpress:VIT_07s0005g05520	EnsemblPlantsGene:VIT_07s0005g05520
EnsemblPlants:VIT_07s0005g05520.t01	unigene:Vvi.10687	RefSeq:XP_002265100	RefSeq:XP_002265100.1	SEG:seg	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:D7U3E6]

Coordinates

chr7:-:9546676..9551518

Molecular Weight (calculated)

49644.9 Da

IEP (calculated)

7.934

GRAVY (calculated)

-0.353

Length

445 amino acids

Sequence
(BLAST)

001: MAVSLRWFSL CSLLVLVLFL RVNADELQKL RVEEKPDQLQ SLENSTMAER LDKSEGWNER NEHAVENPEE VASMVDMSIR NSTERRNLGY FSCGTGNPID
101: DCWRCDPHWQ LHRKRLADCG IGFGRNAIGG RDGRYYVVTD PGDYDAVNPR PGTLRHAVIQ DKPLWIVFKR DMVIKLKQEL IMNSFKTIDA RGVNVHIANG
201: ACITIQFITN VIIHGLNIHD CKPTGNAMVR SSPSHYGWRT MADGDGISIF GSSHIWIDHN SLSNCADGLI DAVMGSTAIT ISNNYFTHHN EVMLLGHSDS
301: YTRDKQMQVT IAYNHFGEGL IQRMPRCRHG YFHVVNNDYT HWEMYAIGGS AEPTINSQGN RYLAPANPFA KEVTKRVITS NSVWKHWNWR SEGDLLLNGA
401: YFTPSGAGAA ASYARASSLG AKSSSMVGTI TSGAGALSCR RGRQC

Best Arabidopsis Sequence Match ( AT4G13710.1 )
(BLAST)

001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC

Arabidopsis Description

Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.