Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 6
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g09810.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 86.35 | 86.35 |
| Solyc05g014000.2.1 | Tomato | extracellular, nucleus | 84.12 | 84.54 |
| PGSC0003DMT400027955 | Potato | extracellular | 83.37 | 83.79 |
| GSMUA_Achr6P28260_001 | Banana | endoplasmic reticulum, extracellular | 81.64 | 80.84 |
| VIT_14s0219g00230.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 80.15 | 80.15 |
| Bra038614.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 81.39 | 79.42 |
| Bra035852.1-P | Field mustard | extracellular | 80.65 | 79.27 |
| CDY41506 | Canola | endoplasmic reticulum, extracellular, vacuole | 81.14 | 79.18 |
| AT5G63180.1 | Thale cress | plastid | 81.89 | 76.39 |
| CDY48132 | Canola | endoplasmic reticulum, golgi | 80.89 | 76.17 |
| CDY16732 | Canola | endoplasmic reticulum, golgi | 80.65 | 75.93 |
| CDY65626 | Canola | golgi | 81.14 | 72.03 |
| VIT_05s0051g00590.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 72.21 | 67.67 |
| VIT_07s0005g05520.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 72.7 | 65.84 |
| VIT_19s0015g00510.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 64.52 | 64.68 |
| VIT_10s0116g01160.t01 | Wine grape | endoplasmic reticulum, extracellular | 51.36 | 54.33 |
| VIT_17s0000g05740.t01 | Wine grape | extracellular | 57.82 | 54.31 |
| VIT_14s0108g00030.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 58.56 | 53.76 |
| VIT_13s0019g04900.t01 | Wine grape | extracellular | 55.09 | 53.37 |
| VIT_01s0026g01670.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 56.58 | 51.47 |
| VIT_01s0026g01680.t01 | Wine grape | endoplasmic reticulum, extracellular | 56.33 | 51.24 |
| VIT_08s0007g04820.t01 | Wine grape | plastid | 61.54 | 50.72 |
| VIT_13s0019g04910.t01 | Wine grape | extracellular | 61.54 | 50.0 |
Protein Annotations
| KEGG:00040+4.2.2.2 | EntrezGene:100242302 | wikigene:100242302 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | InterPro:AmbAllergen |
| ProteinID:CBI16836 | ProteinID:CBI16836.3 | UniProt:D7SMF7 | EMBL:FN594954 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | EntrezGene:LOC100242302 |
| wikigene:LOC100242302 | PFAM:PF00544 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF26 | InterPro:Pec_lyase |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | TIGR:TC53176 |
| UniParc:UPI00019828BB | ArrayExpress:VIT_01s0137g00240 | EnsemblPlantsGene:VIT_01s0137g00240 | EnsemblPlants:VIT_01s0137g00240.t01 | unigene:Vvi.8796 | RefSeq:XP_002285340 |
| RefSeq:XP_002285340.1 | SEG:seg | : | : | : | : |
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:D7SMF7]
Coordinates
chr1:+:6744527..6746460
Molecular Weight (calculated)
44337.3 Da
IEP (calculated)
6.969
GRAVY (calculated)
-0.329
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIPLSVLLF LLPLLSPTFI SSSPVQDPEL VVEEVHKRIN ASRRNLGFLS CGTGNPIDDC WRCDPDWEKN RQGLADCSIG FGRHAIGGRD GEIYVVTDSG
101: DYDPVNPKPG TLRYAVIQKE PLWIIFQRDM VIKLKEELIM NSFKTIDGRG ASVHIAGGPC ITIQYVTNII IHGLNIHDCK QGGNANVRDS PDHYGWRTIS
201: DGDGVSIFGG SHVWVDHCSL SNCNDGLVDA IHGSTAITIS NNYMTHHNKV MLLGHSDSYT QDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYSHW
301: EMYAIGGSAE PTINSQGNRF LAPDDRFSKE VTKHEDAPQS QWKNWNWRSE GDLLLNGAFF TASGAGASSS YAKASSLGAR PSSLITTITN GAGALNCKKG
401: KRC
101: DYDPVNPKPG TLRYAVIQKE PLWIIFQRDM VIKLKEELIM NSFKTIDGRG ASVHIAGGPC ITIQYVTNII IHGLNIHDCK QGGNANVRDS PDHYGWRTIS
201: DGDGVSIFGG SHVWVDHCSL SNCNDGLVDA IHGSTAITIS NNYMTHHNKV MLLGHSDSYT QDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYSHW
301: EMYAIGGSAE PTINSQGNRF LAPDDRFSKE VTKHEDAPQS QWKNWNWRSE GDLLLNGAFF TASGAGASSS YAKASSLGAR PSSLITTITN GAGALNCKKG
401: KRC
001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC
Arabidopsis Description
Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.